The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR9
  5. ljc-miR9b

Accession: B41351686

Entry

ID: ljc-miR9b
Alias: F4396.M000048.A25
Sequence: UCUUUGGUUAUCUAGCUGUAUG
Description: mir-9/mir-79 microRNA precursor family predicted,partially
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR9b; Bsr-miR9a; Bswzz-miR9a; acr-miR9b; act-miR9a; aeu-miR9a; apl-miR9a; ath-miR9a; bca-miR9b; bhi-miR9a; cab-miR9; cas-miR9a; cba-miR9a; cci-miR9a; ccs-miR9a; cfe-miR9b; cid-miR9a; cit-miR9b; cja-miR9; cmd-miR9b; cmj-miR9; cmo-miR9a; cof-miR9b; cph-miR9; csp-miR9a; csu-miR9b; efo-miR9a; eja-miR9; fmu-miR9a; fsu-miR9b; gbi-miR9a; gel-miR9; hcr-miR9b; hof-miR9a; hvu-miR9; ija-miR9a; lba-miR9b; lcr-miR9a; ljc-miR9b; lji-miR9a; ljn-miR9a; ljo-miR9b; llc-miR9a; llu-miR9b; mal-miR9b; nja-miR9a; nsc-miR9a; ofi-miR9a; pas-miR9a; pfr-miR9b; poe-miR9b; por-miR9; ppr-miR9b; pvl-miR9b; rch-miR9; rcr-miR9b; run-miR9a; sba-miR9b; sch-miR9; sdi-miR9; sgi-miR9b; sgl-miR9; sjp-miR9a; sor-miR9b; spo-miR9; tch-miR9b; tci-miR9a; tfa-miR9b; tki-miR9b; tmo-miR9b; twi-miR9a; vtr-miR9a; zof-miR9b;

Rfam Alignments

>> mir-9  mir-9/mir-79 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00096   22.9   0.0  cm        2       23 ~~           1          22 + ~~ 1.00 5'&3' 0.36
                                                             ???????????????  ???       NC
                                                      ~~~~~::<<<<<<<<<<<<<<<--<<<~~~~~~ CS
                                             mir-9  1 <[1]*UCUUuGGUuaucUAGCUGUAUG*[39]> 62
                                                           UCUUUGGUUAUCUAGCUGUAUG
                                         zof-miR9b  1 <[0]*UCUUUGGUUAUCUAGCUGUAUG*[ 0]> 22
                                                      .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001282932 ;  

Predicted by TAPIR

NM_001282932 ;   NM_001363507 ;   NM_001363509 ;