The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR7
  5. ljc-miR7d

Accession: B41495725

Entry

ID: ljc-miR7d
Alias: F98069.M000058.A25
Sequence: UGGAAGACUAGUGAUUUUGUUG
Description: mir-7 microRNA precursor predicted,partially
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR7i; bca-miR7d; cfe-miR7e; cmd-miR7g; csu-miR7d; fsu-miR7b; gel-miR7d; hcr-miR7c; ljc-miR7d; ljn-miR7b; ljo-miR7b; mpu-miR7b; ofi-miR7b; pfr-miR7d; poe-miR7e; pvl-miR7b; sar-miR7b; sba-miR7c; sgi-miR7d; tki-miR7h; zof-miR7d;

Rfam Alignments

>> mir-7  mir-7 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0011   22.5   0.0  cm       15       36 ~~           1          22 + ~~ 1.00 5'&3' 0.36
                                                                 ??       ????? ??????       NC
                                                          ~~~~~~-<<-------<<<<<-<<<<<<~~~~~~ CS
                                                 mir-7  1 <[14]*UGGAAGACUAGuGAuUUUgUUG*[52]> 88
                                                                UGGAAGACUAGUGAUUUUGUUG
                                             zof-miR7d  1 <[ 0]*UGGAAGACUAGUGAUUUUGUUG*[ 0]> 22
                                                          ......**********************...... PP

Targets

Predicted by TargetFinder

NM_001005353 ;   NM_001048166 ;   NM_001282936 ;   NM_001282937 ;   NM_001282938 ;   NM_001282939 ;   NM_001330616 ;   NM_003035 ;   NM_013410 ;   NM_203464 ;   NR_039867 ;  

Predicted by TAPIR

NM_001005353 ;   NM_001048166 ;   NM_001166058 ;   NM_001178084 ;   NM_001282936 ;   NM_001282937 ;   NM_001282938 ;   NM_001282939 ;   NM_001330616 ;   NM_003035 ;   NM_013410 ;   NM_130806 ;   NM_203464 ;   NR_039867 ;