The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR21
  5. ljc-miR21

Accession: B41306047

Entry

ID: ljc-miR21
Alias: F2083.O000147.A25
Sequence: UAGCUUAUCAGACUGAUGUUGACU
Description: microRNA mir-21 predicted
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR21b; Bswzz-miR21; acr-miR21; apa-miR21; asc-miR21; bca-miR21c; bch-miR21; bhi-miR21; car-miR21b; cas-miR21; cba-miR21; cci-miR21; cfe-miR21c; cit-miR21b; cmd-miR21c; cmj-miR21; cof-miR21; cri-miR21b; cso-miR21; csp-miR21; csu-miR21; ehu-miR21; epr-miR21; esn-miR21; fmu-miR21; gel-miR21b; hcr-miR21b; kga-miR21; lba-miR21; ljc-miR21; ljp-miR21; llu-miR21; pfr-miR21b; pgi-miR21; poe-miR21; ppr-miR21b; run-miR21; sca-miR21; sch-miR21; sdf-miR21; sdi-miR21b; sgi-miR21; sor-miR21b; tch-miR21; tki-miR21b; vph-miR21; zof-miR21b;

Rfam Alignments

>> mir-21  microRNA mir-21
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0059   19.9   0.0  cm        8       31 ~~           1          24 + ~~ 1.00 5'&3' 0.38
                                                              ????????  ????? ????? ??       NC
                                                         ~~~~~<<<<<<<<--<<<<<-<<<<<-<<~~~~~~ CS
                                               mir-21  1 <[7]*uAGCuuAuCAGACuGgUGUuGgCu*[41]> 72
                                                              UAGCUUAUCAGACUG+UGUUG+CU
                                           zof-miR21b  1 <[0]*UAGCUUAUCAGACUGAUGUUGACU*[ 0]> 24
                                                         .....************************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR