The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR126
  5. ljc-miR126

Accession: B41252719

Entry

ID: ljc-miR126
Alias: F950.M000006.A25
Sequence: UCGUACCGUGAGUAAUAAUGCG
Description: microRNA mir-126 predicted
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR126c; Bswzz-miR126b; aar-miR126; acr-miR126b; act-miR126; asc-miR126c; bca-miR126b; bch-miR126b; bhi-miR126b; car-miR126a; cas-miR126b; cba-miR126b; cci-miR126b; cfe-miR126b; cit-miR126c; cma-miR126b; cmd-miR126c; cmj-miR126; cmo-miR126; cof-miR126b; cor-miR126; cph-miR126; cri-miR126b; cso-miR126; csp-miR126a; csu-miR126b; cya-miR126; ehu-miR126b; eja-miR126; epr-miR126b; esn-miR126b; est-miR126; fmu-miR126b; fth-miR126; gel-miR126b; hcr-miR126c; hof-miR126; hvu-miR126; kga-miR126b; lba-miR126b; ljc-miR126; lji-miR126b; ljp-miR126b; lln-miR126; llu-miR126b; mal-miR126b; mpu-miR126a; nnu-miR126b; nte-miR126b; pch-miR126; pfr-miR126b; poe-miR126c; ppr-miR126b; psu-miR126b; pvl-miR126b; run-miR126b; sar-miR126b; sba-miR126a; sbc-miR126b; sca-miR126b; sch-miR126b; sdf-miR126b; sdi-miR126b; sgi-miR126b; sln-miR126b; sor-miR126c; tch-miR126b; tfa-miR126; tki-miR126b; tmo-miR126; vph-miR126b; zof-miR126b;

Rfam Alignments

>> mir-126  microRNA mir-126
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.005   19.5   0.0  cm       46       67 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                               ??????? ???????????        NC
                                                        ~~~~~~->>>>>>>->>>>>>>>>>>::~~~~~ CS
                                             mir-126  1 <[45]*UCGUACCgUgAGUAAUAAUGCg*[6]> 73
                                                              UCGUACCGUGAGUAAUAAUGCG
                                         zof-miR126b  1 <[ 0]*UCGUACCGUGAGUAAUAAUGCG*[0]> 22
                                                        ......**********************..... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR