The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. ljc-miR10a

Accession: B41226873

Entry

ID: ljc-miR10a
Alias: F734.M000001.A25*
Sequence: UACCCUGUAGAUCCGAAUUUGU
Description: mir-10 microRNA precursor family predicted,partially
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10aa; Bswzz-miR10a; Btmz-miR10; aar-miR10; acr-miR10a; act-miR10a; asc-miR10a; ath-miR10a; bca-miR10a; bch-miR10a; bhi-miR10a; bpi-miR10a; car-miR10a; cas-miR10a; cba-miR10a; cci-miR10a; cco-miR10; cfe-miR10aa; cit-miR10aa; cmd-miR10aa; cri-miR10a; csp-miR10a; csu-miR10a; esn-miR10a; fmu-miR10a; fsu-miR10a; gbi-miR10; gel-miR10a; hcr-miR10a; hvu-miR10; kga-miR10a; lba-miR10a; lcr-miR10; ljc-miR10a; ljn-miR10a; ljp-miR10a; pas-miR10a; pfr-miR10a; poe-miR10aa; ppr-miR10a; psu-miR10a; pvl-miR10a; rch-miR10; run-miR10a; sad-miR10a; sch-miR10a; sdf-miR10a; sgi-miR10a; sgl-miR10; sjp-miR10; sor-miR10aa; tfa-miR10a; tki-miR10a; tmo-miR10a; vph-miR10a; vtr-miR10c; zof-miR10a;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00034   21.6   0.0  cm        8       29 ~~           1          22 + ~~ 1.00 5'&3' 0.41
                                                             ???   ??????????????       NC
                                                      ~~~~~--<<<---<<<<<<<<<<<<<<~~~~~~ CS
                                            mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGU*[46]> 75
                                                           UACCCUGUAGAUCCGAA UUGU
                                        zof-miR10a  1 <[0]*UACCCUGUAGAUCCGAAUUUGU*[ 0]> 22
                                                      .....**********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR