The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. ljc-miR10c

Accession: B41407439

Entry

ID: ljc-miR10c
Alias: F10989.L000014.A25
Sequence: AACCCGUAGAUCCGAACUUGU
Description: mir-10 microRNA precursor family predicted,partially
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10ai; acr-miR10c; act-miR10b; asc-miR10d; bca-miR10h; bhi-miR10c; bpi-miR10d; car-miR10b; cas-miR10c; cba-miR10e; cci-miR10d; cfe-miR10ah; cit-miR10ak; cmd-miR10ai; cof-miR10d; csp-miR10g; ehu-miR10b; epr-miR10b; esn-miR10h; fmu-miR10d; fsu-miR10f; gel-miR10f; hcr-miR10h; ljc-miR10c; ljo-miR10b; ljp-miR10c; llu-miR10c; poe-miR10ai; ppr-miR10h; pvl-miR10h; sdf-miR10c; sgi-miR10h; sor-miR10ak; tki-miR10h; tmo-miR10e; zof-miR10f;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0034   18.4   0.0  cm        8       29 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                                ???   ??????????????       NC
                                                         ~~~~~--<<<---<<<<<<<<<<<<<<~~~~~~ CS
                                               mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGU*[46]> 75
                                                              +ACCC GUAGAUCCGAACUUGU
                                           zof-miR10f  1 <[0]*AACCC-GUAGAUCCGAACUUGU*[ 0]> 21
                                                         .....*****.****************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR