The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR184
  5. ljc-miR184e

Accession: B41472875

Entry

ID: ljc-miR184e
Alias: F52855.K000047.A25*
Sequence: UGGACGGAGAACUGAUAAGG
Description: microRNA mir-184 predicted
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR184e; acr-miR184c; act-miR184c; bca-miR184d; cfe-miR184c; cit-miR184a; cmd-miR184f; cof-miR184e; gel-miR184c; ljc-miR184e; lji-miR184b; pas-miR184b; poe-miR184d; tfa-miR184c; tki-miR184b; tmo-miR184d; zof-miR184e;

Rfam Alignments

>> mir-184  microRNA mir-184
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0036   19.7   0.0  cm       53       72 ~~           1          20 + ~~ 1.00 5'&3' 0.50
                                                                 ??? ??????? ????????       NC
                                                           ~~~~~~>>>->>>>>>>->>>>>>>>~~~~~~ CS
                                                mir-184  1 <[52]*uGGACgGAgAACUGAUAAGG*[12]> 84
                                                                 UGGACGGAGAACUGAUAAGG
                                            zof-miR184e  1 <[ 0]*UGGACGGAGAACUGAUAAGG*[ 0]> 20
                                                           ......********************...... PP

Targets

Predicted by TargetFinder

NM_001134420 ;   NM_001243027 ;   NM_001243028 ;   NM_001305008 ;   NM_001305009 ;   NM_001305010 ;   NM_001305011 ;   NM_001330511 ;   NM_001363613 ;   NM_001433 ;   NM_001626 ;   NM_003642 ;   NM_003799 ;   NM_007045 ;   NM_018050 ;   NM_018129 ;   NM_030650 ;   NM_194429 ;   NR_027862 ;   NR_033833 ;   NR_130941 ;  

Predicted by TAPIR

NM_001165963 ;   NM_001165964 ;   NM_001202435 ;   NM_001243027 ;   NM_001243028 ;   NM_001305008 ;   NM_001305009 ;   NM_001305010 ;   NM_001305011 ;   NM_001330511 ;   NM_001351220 ;   NM_001351222 ;   NM_001351223 ;   NM_001353948 ;   NM_001353949 ;   NM_001353950 ;   NM_001353951 ;   NM_001353952 ;   NM_001353954 ;   NM_001353955 ;   NM_001353957 ;   NM_001353958 ;   NM_001353960 ;   NM_001353961 ;   NM_001363613 ;   NM_001433 ;   NM_001626 ;   NM_003642 ;   NM_003799 ;   NM_006920 ;   NM_007045 ;   NM_018050 ;   NM_018129 ;   NM_030650 ;   NM_194429 ;   NR_027862 ;   NR_033833 ;   NR_130941 ;   NR_148667 ;