The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. ljc-miR166f

Accession: B41079742

Entry

ID: ljc-miR166f
Alias: F77.K000037.A3D
Sequence: UCGGACCAGGCUUCAUUCCC
Description: MIR166 putative
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

cme-miR166g; csi-miR166c-3p; gma-miR166p; gma-miR166q; gma-miR166r; gma-miR166s; gma-miR166t; sbi-miR166a; sbi-miR166b; sbi-miR166c; sbi-miR166d; sbi-miR166h; sbi-miR166i; sbi-miR166j; tcc-miR166b; zma-miR166b-3p; zma-miR166c-3p; zma-miR166d-3p; zma-miR166e; zma-miR166f; zma-miR166g-3p; zma-miR166h-3p; zma-miR166i-3p;

Bencao Homologs

Bbj-miR166b; Bjl-miR166c; Bsr-miR166f; Btmz-miR166e; aan-miR166g; aar-miR166f; abs-miR166a; acn-miR166c; acr-miR166c; ade-miR166e; aeu-miR166c; aha-miR166g; aju-miR166b; ala-miR166i; aox-miR166e; apa-miR166e; apl-miR166g; asc-miR166e; asi-miR166a; ath-miR166d; ave-miR166e; bca-miR166c; bch-miR166d; bci-miR166b; bhi-miR166d; bja-miR166b; bmj-miR166d; bpi-miR166d; cab-miR166c; car-miR166k; cas-miR166f; cau-miR166e; cci-miR166c; ccm-miR166b; cco-miR166ah; ccs-miR166ah; cde-miR166d; cid-miR166g; cit-miR166g; cja-miR166g; clo-miR166; cmi-miR166c; cmj-miR166d; cmn-miR166e; cmo-miR166h; cof-miR166ah; cpe-miR166d; cri-miR166b; cso-miR166d; csp-miR166f; csu-miR166e; das-miR166b; dlo-miR166c; dst-miR166i; dsu-miR166b; efo-miR166g; ehu-miR166e; eja-miR166e; epr-miR166am; esn-miR166b; est-miR166i; fmu-miR166e; fsu-miR166h; fvu-miR166b; gbi-miR166ai; gja-miR166d; gma-miR166g; gmc-miR166g; gpe-miR166e; gsi-miR166e; hcr-miR166al; hmu-miR166f; hoc-miR166b; hof-miR166g; hvu-miR166c; iba-miR166g; ija-miR166h; ili-miR166g; ini-miR166g; ksc-miR166c; lch-miR166d; lcr-miR166f; lfo-miR166f; lgr-miR166e; ljc-miR166f; lji-miR166e; ljn-miR166e; ljo-miR166b; ljp-miR166f; llc-miR166h; llu-miR166e; lpu-miR166ah; mal-miR166f; mca-miR166aj; mch-miR166g; mda-miR166b; nca-miR166e; nja-miR166e; nnu-miR166af; nsc-miR166e; nte-miR166g; ofi-miR166c; pas-miR166g; pav-miR166f; pca-miR166c; pch-miR166; pci-miR166c; pcl-miR166h; pcn-miR166e; pfr-miR166al; pgi-miR166b; pmu-miR166c; poe-miR166e; por-miR166g; psu-miR166c; ptn-miR166e; pvl-miR166al; rcd-miR166b; rch-miR166af; rcr-miR166f; rja-miR166e; rte-miR166f; run-miR166b; sad-miR166f; sar-miR166e; sba-miR166e; sbc-miR166i; sch-miR166h; sdf-miR166f; sdi-miR166d; sgl-miR166c; sjp-miR166b; smi-miR166d; smn-miR166g; sor-miR166g; ssa-miR166f; sse-miR166d; ssu-miR166d; sto-miR166f; tch-miR166c; tci-miR166f; tfa-miR166d; tja-miR166d; tmo-miR166f; tru-miR166c; twi-miR166d; vof-miR166h; vph-miR166d; vtr-miR166g; vum-miR166e; xst-miR166c; zmu-miR166c;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00014   22.7   0.0  cm      101      120 ~~           1          20 + ~~ 1.00 5'&3' 0.60
                                                                 ???  ??????  ???????      NC
                                                          ~~~~~~~>>>-->>>>>>-->>>>>>>~~~~~ CS
                                              mir-166   1 <[100]*UCGGACCAGGCUUCAUUCCc*[6]> 126
                                                                 UCGGACCAGGCUUCAUUCCC
                                          zmu-miR166c   1 <[  0]*UCGGACCAGGCUUCAUUCCC*[0]> 20
                                                          .......********************..... PP

Targets

Predicted by TargetFinder

NM_000738 ;   NM_001358263 ;   NM_015221 ;   NM_017811 ;   NM_153350 ;   NR_148968 ;  

Predicted by TAPIR

NM_000738 ;   NM_001358263 ;   NM_002207 ;   NM_015221 ;   NM_017811 ;   NM_017814 ;   NM_153350 ;   NR_148968 ;