The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. lch-miR10c

Accession: B39889614

Entry

ID: lch-miR10c
Alias: F10989.N000096.A25
Sequence: AACCCGUAGAUCCGAUCUUGUGA
Description: mir-10 microRNA precursor family predicted,partially
Species: 半边莲  Species latin name: Lobelia chinensis
TCM Name:
TCM Resource (Sample number): 半边莲(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10am; Bswzz-miR10d; abi-miR10; acr-miR10e; agr-miR10b; asc-miR10f; bca-miR10j; bch-miR10h; bhi-miR10e; car-miR10d; cas-miR10d; cba-miR10g; cci-miR10f; cfe-miR10ak; cit-miR10at; cma-miR10b; cmd-miR10al; cof-miR10f; csp-miR10j; csu-miR10d; ehu-miR10d; eja-miR10c; epr-miR10d; esn-miR10j; fmu-miR10f; fsu-miR10h; fth-miR10b; gel-miR10h; hcr-miR10k; hoc-miR10; hof-miR10b; lba-miR10d; lch-miR10c; lji-miR10b; ljo-miR10d; ljp-miR10e; lln-miR10a; llu-miR10e; mal-miR10c; nnu-miR10c; nte-miR10b; pfr-miR10e; poe-miR10ap; ppr-miR10k; psu-miR10c; pvl-miR10j; run-miR10d; sar-miR10d; sch-miR10d; sdf-miR10e; sgi-miR10k; sln-miR10c; sor-miR10ar; tch-miR10d; tfa-miR10d; tki-miR10m; vph-miR10f; zof-miR10h;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.002   19.2   0.0  cm        8       31 ~~           1          23 + ~~ 1.00 5'&3' 0.48
                                                              ???   ???????????????        NC
                                                       ~~~~~--<<<---<<<<<<<<<<<<<<<_~~~~~~ CS
                                             mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGUGu*[44]> 75
                                                            +ACCC GUAGAUCCGA CUUGUG
                                         zof-miR10h  1 <[0]*AACCC-GUAGAUCCGAUCUUGUGA*[ 0]> 23
                                                       .....*****.******************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR