The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR8
  5. hcr-miR8l

Accession: B35943658

Entry

ID: hcr-miR8l
Alias: F118715.L000017.A25
Sequence: UAAUACUGCCUGGUAAUGAUG
Description: mir-8/mir-141/mir-200 microRNA precursor family predicted,partially
Species: 蕺菜  Species latin name: Houttuynia cordata
TCM Name: Yuxingcao(鱼腥草)  
TCM Resource (Sample number): 鱼腥草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR8n; Bswzz-miR8e; bca-miR8o; bch-miR8i; cfe-miR8j; cit-miR8i; cmd-miR8o; fmu-miR8j; gel-miR8f; hcr-miR8l; kga-miR8b; lba-miR8c; poe-miR8q; ppr-miR8l; sch-miR8e; sgi-miR8i; sor-miR8g; tch-miR8e;

Rfam Alignments

>> mir-8  mir-8/mir-141/mir-200 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   20.9   0.0  cm       48       68 ~~           1          21 + ~~ 1.00 5'&3' 0.38
                                                                 ?????????   ???? ????      NC
                                                           ~~~~~~>>>>>>>>>--->>>>->>>>~~~~~ CS
                                                  mir-8  1 <[47]*uAAcACUGcCUGGUAAuGAUG*[8]> 76
                                                                 UAA ACUGCCUGGUAAUGAUG
                                              tch-miR8e  1 <[ 0]*UAAUACUGCCUGGUAAUGAUG*[0]> 21
                                                           ......9********************..... PP

Targets

Predicted by TargetFinder

NM_001100422 ;   NM_001100423 ;   NM_001100424 ;   NM_001164549 ;   NM_001282735 ;   NM_001282743 ;   NM_001282744 ;   NM_001303456 ;   NM_003162 ;   NM_006468 ;   NM_006750 ;   NM_015535 ;  

Predicted by TAPIR

NM_001242946 ;   NM_001242948 ;   NM_006750 ;   NM_017549 ;   NR_125376 ;