The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR24
  5. hcr-miR24d

Accession: B35789320

Entry

ID: hcr-miR24d
Alias: F2534.J000220.A11*
Sequence: UGGCUCAGUUCAGCAGGAU
Description: mir-24 microRNA precursor family predicted,partially
Species: 蕺菜  Species latin name: Houttuynia cordata
TCM Name: Yuxingcao(鱼腥草)  
TCM Resource (Sample number): 鱼腥草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR24b; cit-miR24ag; hcr-miR24d; vph-miR24c;

Rfam Alignments

>> mir-24  mir-24 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0047   17.8   0.0  cm       44       61 ~.           1          18 + ~. 1.00    5' 0.56
                                   ????????? ???  NC
                         ~~~~~~____>>>>>>>>>->>>- CS
               mir-24  9 <[35]*UGGCUCAGuUCAGCAGGA 61
                               UGGCUCAGUUCAGCAGGA
           vph-miR24c  1 <[ 0]*UGGCUCAGUUCAGCAGGA 18
                         ......****************** PP

Targets

Predicted by TargetFinder

NM_000458 ;   NM_000926 ;   NM_001005180 ;   NM_001012454 ;   NM_001077594 ;   NM_001078175 ;   NM_001078177 ;   NM_001081442 ;   NM_001081443 ;   NM_001081450 ;   NM_001127320 ;   NM_001128926 ;   NM_001130917 ;   NM_001144026 ;   NM_001144027 ;   NM_001144028 ;   NM_001165038 ;   NM_001165039 ;   NM_001165923 ;   NM_001170931 ;   NM_001172654 ;   NM_001201427 ;   NM_001202474 ;   NM_001202543 ;   NM_001256071 ;   NM_001265615 ;   NM_001271161 ;   NM_001271162 ;   NM_001278426 ;   NM_001278427 ;   NM_001278428 ;   NM_001278429 ;   NM_001278430 ;   NM_001281834 ;   NM_001281835 ;   NM_001281836 ;   NM_001281837 ;   NM_001281838 ;   NM_001281853 ;   NM_001284511 ;   NM_001284512 ;   NM_001287815 ;   NM_001290254 ;   NM_001290255 ;   NM_001290270 ;   NM_001304286 ;   NM_001304457 ;   NM_001304462 ;   NM_001304465 ;   NM_001304466 ;   NM_001305043 ;   NM_001305049 ;   NM_001305051 ;   NM_001305052 ;   NM_001305066 ;   NM_001317939 ;   NM_001317940 ;   NM_001317950 ;   NM_001318915 ;   NM_001320960 ;   NM_001324118 ;   NM_001330552 ;   NM_001360167 ;   NM_001369859 ;   NM_001372327 ;   NM_001495 ;   NM_002115 ;   NM_002338 ;   NM_002862 ;   NM_003716 ;   NM_004872 ;   NM_005417 ;   NM_005938 ;   NM_006840 ;   NM_006864 ;   NM_006865 ;   NM_007285 ;   NM_012314 ;   NM_014049 ;   NM_014434 ;   NM_014611 ;   NM_015345 ;   NM_016580 ;   NM_017637 ;   NM_019119 ;   NM_021116 ;   NM_024318 ;   NM_030767 ;   NM_032206 ;   NM_080706 ;   NM_145278 ;   NM_152341 ;   NM_173647 ;   NM_173663 ;   NM_181552 ;   NM_183393 ;   NM_183394 ;   NM_198291 ;   NM_199461 ;   NR_003061 ;   NR_033426 ;   NR_036109 ;   NR_036551 ;   NR_037709 ;   NR_038917 ;   NR_046851 ;   NR_047551 ;   NR_073017 ;   NR_073141 ;   NR_073142 ;   NR_073143 ;   NR_104098 ;   NR_130929 ;   NR_132117 ;   NR_134503 ;   NR_135493 ;   NR_135494 ;   NR_135495 ;   NR_135496 ;   NR_148046 ;   NR_159407 ;   NR_161198 ;   NR_161199 ;  

Predicted by TAPIR

NM_000633 ;   NM_000926 ;   NM_001005180 ;   NM_001012454 ;   NM_001017924 ;   NM_001024661 ;   NM_001039083 ;   NM_001040664 ;   NM_001077594 ;   NM_001082959 ;   NM_001103154 ;   NM_001113738 ;   NM_001128926 ;   NM_001134673 ;   NM_001144026 ;   NM_001144027 ;   NM_001144028 ;   NM_001145511 ;   NM_001145512 ;   NM_001165038 ;   NM_001165039 ;   NM_001168370 ;   NM_001170931 ;   NM_001198690 ;   NM_001199563 ;   NM_001202474 ;   NM_001202543 ;   NM_001252385 ;   NM_001252386 ;   NM_001252390 ;   NM_001252391 ;   NM_001252392 ;   NM_001252393 ;   NM_001256071 ;   NM_001256267 ;   NM_001256268 ;   NM_001258454 ;   NM_001258455 ;   NM_001258456 ;   NM_001271161 ;   NM_001271162 ;   NM_001282712 ;   NM_001284223 ;   NM_001284511 ;   NM_001284512 ;   NM_001288811 ;   NM_001288812 ;   NM_001288813 ;   NM_001290254 ;   NM_001290255 ;   NM_001297698 ;   NM_001301188 ;   NM_001301190 ;   NM_001301193 ;   NM_001301196 ;   NM_001301201 ;   NM_001303 ;   NM_001317939 ;   NM_001317940 ;   NM_001317950 ;   NM_001318915 ;   NM_001322117 ;   NM_001322118 ;   NM_001322119 ;   NM_001324118 ;   NM_001330240 ;   NM_001330244 ;   NM_001352769 ;   NM_001355281 ;   NM_001363805 ;   NM_001364486 ;   NM_001364487 ;   NM_001367981 ;   NM_001367983 ;   NM_001367984 ;   NM_001367985 ;   NM_001367986 ;   NM_001367987 ;   NM_001367988 ;   NM_001367989 ;   NM_001369859 ;   NM_001370356 ;   NM_001370357 ;   NM_001370358 ;   NM_001370359 ;   NM_001370361 ;   NM_001370364 ;   NM_001370366 ;   NM_001495 ;   NM_002115 ;   NM_002338 ;   NM_002566 ;   NM_002862 ;   NM_003716 ;   NM_004556 ;   NM_005028 ;   NM_005417 ;   NM_005505 ;   NM_005938 ;   NM_006058 ;   NM_007073 ;   NM_007285 ;   NM_012314 ;   NM_014049 ;   NM_014434 ;   NM_014611 ;   NM_014780 ;   NM_015072 ;   NM_016580 ;   NM_016632 ;   NM_017637 ;   NM_020041 ;   NM_021116 ;   NM_021158 ;   NM_022370 ;   NM_024865 ;   NM_030767 ;   NM_032578 ;   NM_080706 ;   NM_147147 ;   NM_152341 ;   NM_153443 ;   NM_153603 ;   NM_173647 ;   NM_181552 ;   NM_183393 ;   NM_183394 ;   NM_198291 ;   NR_033426 ;   NR_036109 ;   NR_037709 ;   NR_038917 ;   NR_045662 ;   NR_045663 ;   NR_047551 ;   NR_073141 ;   NR_073142 ;   NR_073143 ;   NR_120529 ;   NR_134503 ;   NR_135816 ;   NR_148046 ;   NR_160416 ;   NR_160417 ;   NR_160418 ;   NR_160419 ;   NR_160420 ;   NR_160421 ;   NR_160422 ;   NR_160423 ;   NR_160424 ;   NR_161198 ;   NR_161199 ;   NR_163410 ;   NR_163411 ;   NR_163412 ;   NR_163414 ;