Entry

ID: hcr-miR1aw
Alias: F5708.L000143.A11
Sequence: GGAAUGUAAAGAAGUAUGUAG
Description: mir-1 microRNA precursor family predicted,partially
Species: 蕺菜 Species latin name: Houttuynia cordata
TCM Name: Yuxingcao(鱼腥草)
TCM Resource (Sample number): 鱼腥草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

hcr-miR1aw; sar-miR1n;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0093   19.3   0.0  cm       50       70 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                               ?? ??????????????????      NC
                         ~~~~~~>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[49]*GGAAUgUAAaGAAGuAUGuag*[7]> 77
                               GGAAUGUAAAGAAGUAUGUAG
            sar-miR1n  1 <[ 0]*GGAAUGUAAAGAAGUAUGUAG*[0]> 21
                         ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000655 ; NM_000833 ; NM_000892 ; NM_001134407 ; NM_001134408 ; NM_001145373 ; NM_001201477 ; NM_001318394 ; NM_001318396 ; NM_005562 ; NM_013254 ; NM_016354 ; NM_018092 ; NM_133448 ; NM_153700 ; NR_015436 ; NR_029467 ; NR_146078 ; NR_152235 ; NR_152238 ; NR_152239 ; NR_152242 ;

Predicted by TAPIR

NM_000833 ; NM_000892 ; NM_001134407 ; NM_001134408 ; NM_001161560 ; NM_001161561 ; NM_001161562 ; NM_001161563 ; NM_001161564 ; NM_001161565 ; NM_001161566 ; NM_001166018 ; NM_001201477 ; NM_001318394 ; NM_001318396 ; NM_001370959 ; NM_005562 ; NM_007252 ; NM_015028 ; NM_018092 ; NM_021637 ; NR_015436 ; NR_152235 ; NR_152238 ; NR_152239 ; NR_152242 ;

The Bencao (Herbal) Database（本草数据库）

Accession: B35828265