The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR160
  5. hcr-miR160a

Accession: B35593325

Entry

ID: hcr-miR160a
Alias: F7.L000003.A3D
Sequence: UGCCUGGCUCCCUGUAUGCCA
Description: MIR160 putative
Species: 蕺菜  Species latin name: Houttuynia cordata
TCM Name: Yuxingcao(鱼腥草)  
TCM Resource (Sample number): 鱼腥草(2)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR160a-5p; aly-miR160b-5p; aly-miR160c-5p; aof-miR160c; aqc-miR160b; ata-miR160a-5p; ata-miR160b-5p; ata-miR160c-5p; ath-miR160a-5p; ath-miR160b; ath-miR160c-5p; atr-miR160; bdi-miR160a-5p; bdi-miR160b-5p; bdi-miR160c-5p; bdi-miR160d-5p; bna-miR160a; bna-miR160b; bna-miR160c; bna-miR160d; bra-miR160a-5p; cca-miR160b; cme-miR160a; cme-miR160b; cme-miR160c; cpa-miR160a; cpa-miR160b; cpa-miR160c-5p; cpa-miR160e; cpa-miR160f-5p; eun-miR160-5p; far-miR160; fve-miR160a; fve-miR160b; gma-miR160a-5p; gma-miR160f; lus-miR160a; lus-miR160b; lus-miR160d; lus-miR160e; lus-miR160f; lus-miR160h; lus-miR160i; lus-miR160j; mdm-miR160a; mdm-miR160b; mdm-miR160c; mdm-miR160d; mdm-miR160e; mes-miR160a; mes-miR160b; mes-miR160d; mtr-miR160a; mtr-miR160b; mtr-miR160d; mtr-miR160e; nta-miR160a; nta-miR160b; nta-miR160c; osa-miR160a-5p; osa-miR160b-5p; osa-miR160c-5p; osa-miR160d-5p; pab-miR160a; pab-miR160b; pab-miR160d; ppe-miR160a; ppe-miR160b; ppt-miR160a; ppt-miR160e; ppt-miR160f; ptc-miR160a; ptc-miR160b-5p; ptc-miR160c-5p; ptc-miR160d; rco-miR160a; rco-miR160b; sbi-miR160a; sbi-miR160b; sbi-miR160c; sbi-miR160d; sbi-miR160e; sly-miR160a; smo-miR160a; smo-miR160b; stu-miR160a-5p; stu-miR160b; tae-miR160; tcc-miR160b; ttu-miR160; vun-miR160; vvi-miR160c; vvi-miR160d; vvi-miR160e; zma-miR160a-5p; zma-miR160b-5p; zma-miR160c-5p; zma-miR160d-5p; zma-miR160e; zma-miR160g-5p;

Bencao Homologs

aan-miR160a; apa-miR160; apl-miR160a; ave-miR160a; ccs-miR160a; cmo-miR160a; dst-miR160a; eja-miR160a; gpe-miR160; gsi-miR160; hcr-miR160a; ili-miR160a; nnu-miR160a; por-miR160a; pvl-miR160a; rcr-miR160a; sba-miR160; sbc-miR160; smi-miR160a; sto-miR160a; tmo-miR160;

Rfam Alignments

>> mir-160  mir-160 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0054   19.2   0.0  cm        4       24 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                                                           ??? ??????? ?????????       NC
                                                      ~~~~~<<<-<<<<<<<-<<<<<<<<<~~~~~~ CS
                                           mir-160  1 <[3]*UGCCUGGCUCCCuGuAUGCCA*[66]> 90
                                                           UGCCUGGCUCCCUGUAUGCCA
                                        tmo-miR160  1 <[0]*UGCCUGGCUCCCUGUAUGCCA*[ 0]> 21
                                                      .....*********************...... PP

Targets

Predicted by TargetFinder

NM_001029883 ;   NM_001037806 ;   NM_001040703 ;   NM_001080471 ;   NM_001172411 ;   NM_001172412 ;   NM_001199427 ;   NM_001300832 ;   NM_001300833 ;   NM_001349608 ;   NM_001349609 ;   NM_001349610 ;   NM_001349612 ;   NM_001349613 ;   NM_001349614 ;   NM_001349615 ;   NM_001349616 ;   NM_001349617 ;   NM_001349618 ;   NM_001349619 ;   NM_001349620 ;   NM_001349621 ;   NM_001349622 ;   NM_001349623 ;   NM_001349624 ;   NM_001349625 ;   NM_001349626 ;   NM_001353682 ;   NM_001353683 ;   NM_001368048 ;   NM_002530 ;   NM_002726 ;   NM_003028 ;   NM_003300 ;   NM_004915 ;   NM_015080 ;   NM_015215 ;   NM_015235 ;   NM_016818 ;   NM_017805 ;   NM_024815 ;   NM_031904 ;   NM_032283 ;   NM_138732 ;   NM_138959 ;   NM_145725 ;   NM_145726 ;   NM_152250 ;   NM_178568 ;   NM_207174 ;   NM_207627 ;   NM_207628 ;   NM_207629 ;   NR_027927 ;   NR_110101 ;  

Predicted by TAPIR

NM_001029883 ;   NM_001037806 ;   NM_001040703 ;   NM_001080471 ;   NM_001178003 ;   NM_001199427 ;   NM_001300833 ;   NM_001301839 ;   NM_001301855 ;   NM_001330446 ;   NM_001353682 ;   NM_001353683 ;   NM_001368048 ;   NM_002291 ;   NM_002726 ;   NM_003028 ;   NM_003300 ;   NM_013260 ;   NM_015080 ;   NM_015235 ;   NM_017805 ;   NM_020643 ;   NM_024556 ;   NM_024815 ;   NM_031904 ;   NM_032283 ;   NM_138732 ;   NM_145725 ;   NM_145726 ;   NM_152250 ;   NR_027927 ;   NR_110101 ;   NR_126036 ;   NR_126037 ;