The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. hof-miR319f

Accession: B36591817

Entry

ID: hof-miR319f
Alias: F230.L000030.A29
Sequence: CUUGGACUGAAGGGAGCUCCC
Description: MIR319 putative
Species: 厚朴  Species latin name: Houpoea officinalis
TCM Name: Houpo(厚朴)   Houpohua(厚朴花)  
TCM Resource (Sample number): 厚朴(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

csi-miR159c-3p; ppt-miR319c; ppt-miR319d-3p; ppt-miR319e;

Bencao Homologs

aan-miR319d; aha-miR319d; aof-miR319f; apa-miR319d; apl-miR319g; ave-miR319c; bca-miR319f; cco-miR319h; ccs-miR319e; clo-miR319e; cmd-miR319b; dst-miR319d; est-miR319f; gbi-miR319d; gmc-miR319g; gpe-miR319d; hcr-miR319d; hof-miR319f; ini-miR319d; kga-miR319d; nnu-miR319f; pav-miR319e; por-miR319e; rcr-miR319f; rja-miR319f; sba-miR319d; sbc-miR319e; sch-miR319e; sdi-miR319c; sgl-miR319e; smi-miR319e; sse-miR319c; ssu-miR319e; tci-miR319c; tmo-miR319c;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   19.4   0.0  cm      164      184 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                                  ???????  ????????         NC
                         ~~~~~~~-->>>>>>>-->>>>>>>>::~~~~~~ CS
              MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCCu*[12]> 196
                                 UUGGACUGAAGGGAGCUCC+
         tmo-miR319c   1 <[  0]*CUUGGACUGAAGGGAGCUCCC*[ 0]> 21
                         .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001171740 ;   NM_001171741 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_016210 ;   NM_022895 ;   NR_029401 ;   NR_033908 ;   NR_104409 ;   NR_132119 ;   NR_135112 ;  

Predicted by TAPIR

NM_001171740 ;   NM_001171741 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001522 ;   NM_016210 ;   NM_022895 ;   NR_029401 ;   NR_033908 ;   NR_038360 ;   NR_104409 ;   NR_132119 ;   NR_135112 ;