The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. fsu-miR10m

Accession: B32200656

Entry

ID: fsu-miR10m
Alias: F49558.N000054.A25
Sequence: AACCCGUAGAUCCGAACUUGUGU
Description: mir-10 microRNA precursor family predicted,partially
Species: 连翘  Species latin name: Forsythia suspensa
TCM Name: Lianqiao(连翘)  
TCM Resource (Sample number): 连翘(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10au; abs-miR10b; act-miR10e; aeu-miR10b; aox-miR10b; asc-miR10k; att-miR10; bca-miR10r; cci-miR10k; cde-miR10b; cfe-miR10as; cit-miR10bj; cmd-miR10at; cmj-miR10b; cof-miR10j; cor-miR10b; cso-miR10b; dsu-miR10a; ehu-miR10f; fsu-miR10m; gel-miR10l; gmc-miR10b; hcr-miR10r; kga-miR10e; ljc-miR10e; ljo-miR10h; llu-miR10i; nja-miR10c; nsc-miR10b; pch-miR10c; pgi-miR10b; poe-miR10bd; ppr-miR10q; pvl-miR10o; rcd-miR10b; rte-miR10c; run-miR10f; sch-miR10g; sdf-miR10k; sgi-miR10p; sor-miR10bf; tki-miR10u; twi-miR10a; vtr-miR10a; zof-miR10n;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00077   20.5   0.0  cm        8       31 ~~           1          23 + ~~ 1.00 5'&3' 0.48
                                                                  ???   ???????????????        NC
                                                           ~~~~~--<<<---<<<<<<<<<<<<<<<_~~~~~~ CS
                                                 mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGUGu*[44]> 75
                                                                +ACCC GUAGAUCCGAACUUGUGU
                                             zof-miR10n  1 <[0]*AACCC-GUAGAUCCGAACUUGUGU*[ 0]> 23
                                                           .....*****.******************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR