The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR168
  5. fsu-miR168d

Accession: B32133718

Entry

ID: fsu-miR168d
Alias: F8884.I000001.A25
Sequence: UCGCUUGGUGCAGGUCGG
Description: microRNA MIR168 predicted
Species: 连翘  Species latin name: Forsythia suspensa
TCM Name: Lianqiao(连翘)  
TCM Resource (Sample number): 连翘(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

aha-miR168b; ave-miR168c; ccs-miR168c; epr-miR168c; fsu-miR168d; gmc-miR168b; lfo-miR168c; nnu-miR168c; por-miR168a; rcr-miR168e; sbc-miR168f; smi-miR168c;

Rfam Alignments

>> MIR168  microRNA MIR168
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.008   16.1   0.0  cm       19       36 ~~           1          18 + ~~ 1.00 5'&3' 0.67
                                                                  ??  ?????????? ???       NC
                                                            ~~~~~~<<--<<<<<<<<<<-<<<~~~~~~ CS
                                                  MIR168  1 <[18]*UCGCUUGGUGCAGGUCGG*[97]> 133
                                                                  UCGCUUGGUGCAGGUCGG
                                             smi-miR168c  1 <[ 0]*UCGCUUGGUGCAGGUCGG*[ 0]> 18
                                                            ......******************...... PP

Targets

Predicted by TargetFinder

NM_001008537 ;   NM_001025091 ;   NM_001040429 ;   NM_001048194 ;   NM_001048195 ;   NM_001090 ;   NM_001116 ;   NM_001134395 ;   NM_001134396 ;   NM_001164694 ;   NM_001164695 ;   NM_001168319 ;   NM_001168407 ;   NM_001168408 ;   NM_001168409 ;   NM_001168410 ;   NM_001168411 ;   NM_001256727 ;   NM_001256728 ;   NM_001261464 ;   NM_001261465 ;   NM_001269 ;   NM_001270546 ;   NM_001271592 ;   NM_001276318 ;   NM_001289984 ;   NM_001289985 ;   NM_001291824 ;   NM_001291825 ;   NM_001291826 ;   NM_001291828 ;   NM_001308143 ;   NM_001316978 ;   NM_001316979 ;   NM_001316980 ;   NM_001316981 ;   NM_001316982 ;   NM_001318252 ;   NM_001318495 ;   NM_001350414 ;   NM_001350415 ;   NM_001350416 ;   NM_001350417 ;   NM_001350418 ;   NM_001350419 ;   NM_001350420 ;   NM_001350421 ;   NM_001350422 ;   NM_001350423 ;   NM_001350424 ;   NM_001350425 ;   NM_001350426 ;   NM_001350427 ;   NM_001350428 ;   NM_001350429 ;   NM_001350430 ;   NM_001350431 ;   NM_001350432 ;   NM_001350433 ;   NM_001350434 ;   NM_001350435 ;   NM_001350436 ;   NM_001350437 ;   NM_001350438 ;   NM_001350439 ;   NM_001350440 ;   NM_001350441 ;   NM_001350442 ;   NM_001350443 ;   NM_001350444 ;   NM_001350445 ;   NM_001350446 ;   NM_001350447 ;   NM_001350448 ;   NM_001350449 ;   NM_001350450 ;   NM_001350454 ;   NM_001350455 ;   NM_001350456 ;   NM_001350457 ;   NM_001350458 ;   NM_001350459 ;   NM_001350460 ;   NM_001350461 ;   NM_001350462 ;   NM_001350463 ;   NM_001350464 ;   NM_001350465 ;   NM_001350466 ;   NM_001350467 ;   NM_001350468 ;   NM_001350469 ;   NM_001350470 ;   NM_001350471 ;   NM_001350472 ;   NM_001350473 ;   NM_001350474 ;   NM_001350968 ;   NM_001350970 ;   NM_001351675 ;   NM_001369364 ;   NM_001370154 ;   NM_001670 ;   NM_001754 ;   NM_001955 ;   NM_002516 ;   NM_003815 ;   NM_004789 ;   NM_004810 ;   NM_004994 ;   NM_006015 ;   NM_006738 ;   NM_006750 ;   NM_007200 ;   NM_012401 ;   NM_013366 ;   NM_014869 ;   NM_014989 ;   NM_015288 ;   NM_015627 ;   NM_018351 ;   NM_020062 ;   NM_024504 ;   NM_024923 ;   NM_025057 ;   NM_030665 ;   NM_032350 ;   NM_032792 ;   NM_032829 ;   NM_139135 ;   NM_139265 ;   NM_145166 ;   NM_145175 ;   NM_152228 ;   NM_172037 ;   NM_174905 ;   NM_182919 ;   NM_203395 ;   NM_207191 ;   NM_207194 ;   NM_207195 ;   NM_207196 ;   NM_207197 ;   NR_034158 ;   NR_040035 ;   NR_048577 ;   NR_048578 ;   NR_048579 ;   NR_103855 ;   NR_104058 ;   NR_134655 ;   NR_144632 ;   NR_147829 ;   NR_147830 ;   NR_147831 ;  

Predicted by TAPIR

NM_001004431 ;   NM_001008537 ;   NM_001025091 ;   NM_001048194 ;   NM_001048195 ;   NM_001090 ;   NM_001101654 ;   NM_001116 ;   NM_001142393 ;   NM_001142552 ;   NM_001143912 ;   NM_001143913 ;   NM_001143914 ;   NM_001143915 ;   NM_001159531 ;   NM_001168319 ;   NM_001168407 ;   NM_001168408 ;   NM_001168409 ;   NM_001168410 ;   NM_001168411 ;   NM_001253846 ;   NM_001256727 ;   NM_001256728 ;   NM_001261464 ;   NM_001261465 ;   NM_001269 ;   NM_001270546 ;   NM_001271033 ;   NM_001271592 ;   NM_001281956 ;   NM_001291824 ;   NM_001291825 ;   NM_001291826 ;   NM_001291828 ;   NM_001316978 ;   NM_001316979 ;   NM_001316980 ;   NM_001316981 ;   NM_001316982 ;   NM_001320698 ;   NM_001330357 ;   NM_001330452 ;   NM_001346083 ;   NM_001348084 ;   NM_001350414 ;   NM_001350415 ;   NM_001350416 ;   NM_001350417 ;   NM_001350418 ;   NM_001350419 ;   NM_001350420 ;   NM_001350421 ;   NM_001350422 ;   NM_001350423 ;   NM_001350424 ;   NM_001350425 ;   NM_001350426 ;   NM_001350427 ;   NM_001350428 ;   NM_001350429 ;   NM_001350430 ;   NM_001350431 ;   NM_001350432 ;   NM_001350433 ;   NM_001350434 ;   NM_001350435 ;   NM_001350436 ;   NM_001350437 ;   NM_001350438 ;   NM_001350439 ;   NM_001350440 ;   NM_001350441 ;   NM_001350442 ;   NM_001350443 ;   NM_001350444 ;   NM_001350445 ;   NM_001350446 ;   NM_001350447 ;   NM_001350448 ;   NM_001350449 ;   NM_001350450 ;   NM_001350455 ;   NM_001350456 ;   NM_001350457 ;   NM_001350458 ;   NM_001350459 ;   NM_001350460 ;   NM_001350461 ;   NM_001350462 ;   NM_001350463 ;   NM_001350464 ;   NM_001350465 ;   NM_001350466 ;   NM_001350467 ;   NM_001350468 ;   NM_001350469 ;   NM_001350470 ;   NM_001350471 ;   NM_001350472 ;   NM_001350473 ;   NM_001350474 ;   NM_001351675 ;   NM_001358235 ;   NM_001363853 ;   NM_001369364 ;   NM_001370154 ;   NM_001500 ;   NM_001670 ;   NM_001955 ;   NM_002897 ;   NM_003366 ;   NM_003558 ;   NM_003815 ;   NM_004789 ;   NM_004810 ;   NM_004994 ;   NM_005076 ;   NM_005671 ;   NM_006015 ;   NM_006094 ;   NM_006403 ;   NM_006738 ;   NM_007200 ;   NM_012401 ;   NM_014593 ;   NM_014978 ;   NM_014989 ;   NM_015001 ;   NM_016836 ;   NM_018351 ;   NM_020062 ;   NM_020457 ;   NM_020836 ;   NM_024504 ;   NM_024923 ;   NM_025057 ;   NM_031897 ;   NM_032792 ;   NM_032829 ;   NM_052896 ;   NM_139135 ;   NM_139265 ;   NM_144664 ;   NM_145166 ;   NM_145175 ;   NM_145814 ;   NM_145815 ;   NM_152228 ;   NM_152660 ;   NM_174905 ;   NM_182563 ;   NM_182919 ;   NM_207191 ;   NM_207194 ;   NM_207195 ;   NM_207196 ;   NM_207197 ;   NR_024160 ;   NR_034158 ;   NR_040035 ;   NR_048577 ;   NR_048578 ;   NR_048579 ;   NR_073131 ;   NR_103855 ;   NR_104058 ;   NR_144350 ;   NR_144632 ;   NR_147829 ;   NR_147830 ;   NR_147831 ;