The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. est-lin-4

Accession: B30600953

Entry

ID: est-lin-4
Alias: F3081.M000020.A11
Sequence: UCCCUGAGACCCUAACUUGUGG
Description: lin-4 microRNA precursor predicted,partially
Species: 牻牛儿苗  Species latin name: Erodium stephanianum
TCM Name: Laoguancao(老鹳草)  
TCM Resource (Sample number): 老鹳草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-lin-4b; acr-lin-4b; asc-lin-4c; cci-lin-4b; cfe-lin-4c; cit-lin-4d; cmd-lin-4d; est-lin-4; fmu-lin-4c; fsu-lin-4c; hcr-lin-4c; ljp-lin-4c; poe-lin-4d; pvl-lin-4c; sar-lin-4b; sdf-lin-4c; sor-lin-4d; zof-lin-4c;

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0033   19.8   0.0  cm        7       28 ~~           1          22 + ~~ 1.00 5'&3' 0.55
                               ??? ???? ??? ????????       NC
                         ~~~~~-<<<-<<<<-<<<-<<<<<<<<~~~~~~ CS
                lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUGA*[43]> 71
                              UCCCUGAGACCC AACUUGUG
           zof-lin-4c  1 <[0]*UCCCUGAGACCCUAACUUGUGG*[ 0]> 22
                         .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001005851 ;   NM_001257135 ;   NM_002309 ;   NM_006736 ;   NM_018196 ;  

Predicted by TAPIR

NM_001005851 ;   NM_001040273 ;   NM_001122957 ;   NM_001136046 ;   NM_001267822 ;   NM_001271926 ;   NM_005881 ;   NM_006736 ;   NM_018196 ;   NM_032265 ;   NM_173555 ;   NR_033962 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;   NR_108100 ;