The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. gel-miR10d

Accession: B33471135

Entry

ID: gel-miR10d
Alias: F8347.M000073.A25
Sequence: ACCCUGUAGAUCCGAAUUUGUG
Description: mir-10 microRNA precursor family predicted,partially
Species: 天麻  Species latin name: Gastrodia elata
TCM Name: Tianma(天麻)  
TCM Resource (Sample number): 天麻(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10ae; asc-miR10c; bca-miR10d; bch-miR10d; cfe-miR10ad; cit-miR10af; cmd-miR10ad; csp-miR10d; esn-miR10d; fsu-miR10c; gel-miR10d; hcr-miR10d; ljn-miR10c; poe-miR10ae; ppr-miR10d; pvl-miR10d; sgi-miR10d; sor-miR10af; tki-miR10d; tmo-miR10c; vph-miR10d;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00026   21.9   0.0  cm        9       30 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                               ???   ???????????????       NC
                                                         ~~~~~-<<<---<<<<<<<<<<<<<<<~~~~~~ CS
                                               mir-10  1 <[8]*ACCCUGUAGAucCGAacuUGUG*[45]> 75
                                                              ACCCUGUAGAUCCGAA UUGUG
                                           vph-miR10d  1 <[0]*ACCCUGUAGAUCCGAAUUUGUG*[ 0]> 22
                                                         .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001172689 ;   NM_001172690 ;   NM_001172691 ;   NM_001172692 ;   NM_015172 ;  

Predicted by TAPIR

NM_001172689 ;   NM_001172690 ;   NM_001172691 ;   NM_001172692 ;