The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR194
  5. gel-miR194b

Accession: B33482223

Entry

ID: gel-miR194b
Alias: F17409.M000003.A25
Sequence: UGUAACAGCAACUCCAUGUGGA
Description: mir-194 microRNA precursor family predicted,partially
Species: 天麻  Species latin name: Gastrodia elata
TCM Name: Tianma(天麻)  
TCM Resource (Sample number): 天麻(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR194b; apa-miR194a; asc-miR194; bca-miR194b; bch-miR194; bci-miR194; bhi-miR194b; bpi-miR194a; car-miR194; cas-miR194b; cfe-miR194b; cit-miR194b; cmd-miR194b; cpe-miR194; cri-miR194a; fsu-miR194a; gel-miR194b; gpe-miR194; hcr-miR194a; lgr-miR194; ljc-miR194b; lji-miR194a; ljn-miR194; ljo-miR194; mal-miR194; mda-miR194; mpu-miR194a; pfr-miR194; pgi-miR194b; poe-miR194b; ppr-miR194b; pvl-miR194b; run-miR194; sad-miR194a; sch-miR194a; sdi-miR194b; sgi-miR194b; sor-miR194b; zof-miR194b;

Rfam Alignments

>> mir-194  mir-194 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0022   20.4   0.0  cm       15       36 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                               ????????? ?????  ????       NC
                                                        ~~~~~~-<<<<<<<<<-<<<<<--<<<<~~~~~~ CS
                                             mir-194  1 <[14]*UGUAACAGCAACuCCAUGUGGA*[49]> 85
                                                              UGUAACAGCAACUCCAUGUGGA
                                         zof-miR194b  1 <[ 0]*UGUAACAGCAACUCCAUGUGGA*[ 0]> 22
                                                        ......**********************...... PP

Targets

Predicted by TargetFinder

NM_001127392 ;   NM_001371457 ;   NM_002410 ;   NM_013279 ;   NM_030773 ;   NR_135738 ;  

Predicted by TAPIR

NM_001127392 ;   NM_013279 ;   NM_030773 ;