The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. gel-miR159c

Accession: B33362674

Entry

ID: gel-miR159c
Alias: F14.L000026.B3D
Sequence: UUUGGAUUGAAGGGAGCUCUG
Description: MIR159 putative
Species: 天麻  Species latin name: Gastrodia elata
TCM Name: Tianma(天麻)  
TCM Resource (Sample number): 天麻(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Yes

Homologs

miRBase Homologs

bdi-miR159b-3p.1; far-miR159; hvu-miR159a; hvu-miR159b; osa-miR159a.1; osa-miR159b; sbi-miR159a; sof-miR159a; sof-miR159b; sof-miR159d; ssp-miR159a; tae-miR159a; tae-miR159b; zma-miR159a-3p; zma-miR159b-3p; zma-miR159f-3p; zma-miR159j-3p; zma-miR159k-3p;

Bencao Homologs

Bjl-miR159e; Bsr-miR159f; ala-miR159f; aox-miR159c; apl-miR159af; ave-miR159f; bca-miR159e; bpi-miR159c; cas-miR159c; cco-miR159af; ccs-miR159af; cfe-miR159b; cit-miR159d; cmd-miR159d; cmi-miR159c; cmj-miR159d; cmo-miR159f; cof-miR159e; csp-miR159ae; dst-miR159f; ehu-miR159e; esn-miR159b; fmu-miR159d; fsu-miR159d; gbi-miR159f; gel-miR159c; gma-miR159af; gpe-miR159f; gsi-miR159f; hcr-miR159d; hof-miR159e; ili-miR159d; ini-miR159e; lba-miR159c; lfo-miR159f; lgr-miR159c; ljn-miR159d; ljo-miR159c; lpu-miR159af; mal-miR159d; mca-miR159af; mpu-miR159b; nnu-miR159af; pav-miR159af; pfr-miR159f; por-miR159af; pvl-miR159af; rcr-miR159af; rja-miR159af; sar-miR159d; sba-miR159d; sbc-miR159e; sch-miR159d; sdi-miR159d; sgl-miR159f; smi-miR159af; sor-miR159e; sto-miR159af; tci-miR159e; tki-miR159c; tmo-miR159d; xst-miR159b;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0021   18.8   0.0  cm      164      183 ~.           1          20 + ~. 1.00    5' 0.45
                                                                   ???????  ????????  NC
                                                          ~~~~~~~-->>>>>>>-->>>>>>>>: CS
                                               MIR159  13 <[151]*uUUGGAcuGAAGGGAGCUCC 183
                                                                 UUUGGA UGAAGGGAGCUC+
                                          xst-miR159b   1 <[  0]*UUUGGAUUGAAGGGAGCUCU 20
                                                          .......******************** PP

Targets

Predicted by TargetFinder

NM_000506 ;   NM_001167671 ;   NM_001167672 ;   NM_001195272 ;   NM_001271634 ;   NM_001311257 ;   NM_005185 ;   NM_005444 ;   NM_005578 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;  

Predicted by TAPIR

NM_001167671 ;   NM_001167672 ;   NM_001195272 ;   NM_001271634 ;   NM_001311257 ;   NM_005185 ;   NM_005444 ;   NM_005578 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;