The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR167
  5. gbi-miR167j

Accession: B33346853

Entry

ID: gbi-miR167j
Alias: F235943.L000008.A11
Sequence: UGAAGCUGUCAGCAUGAUCUG
Description: microRNA MIR167_1 predicted
Species: 银杏  Species latin name: Ginkgo biloba
TCM Name: Baiguo(白果)   Yinxingye(银杏叶)  
TCM Resource (Sample number): 白果(1) 银杏叶(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

apl-miR167l; gbi-miR167j; hcr-miR167i; lpu-miR167j; pvl-miR167h;

Rfam Alignments

>> MIR167_1  microRNA MIR167_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   20.2   0.0  cm       14       34 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                              ??? ?????  ??????????       NC
                        ~~~~~~<<<-<<<<<--<<<<<<<<<<~~~~~~ CS
            MIR167_1  1 <[13]*UGAAGCUGCCAGCAUGAuCUg*[96]> 130
                              UGAAGCUG CAGCAUGAUCUG
         pvl-miR167h  1 <[ 0]*UGAAGCUGUCAGCAUGAUCUG*[ 0]> 21
                        ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001205301 ;   NM_001256695 ;   NM_001267045 ;   NM_001282948 ;   NM_001291623 ;   NM_001291624 ;   NM_001291625 ;   NM_001303107 ;   NM_001303108 ;   NM_001307960 ;   NM_001308026 ;   NM_001318153 ;   NM_001318154 ;   NM_001322252 ;   NM_001322254 ;   NM_001322258 ;   NM_001370528 ;   NM_001371233 ;   NM_001918 ;   NM_002077 ;   NM_005198 ;   NM_025108 ;   NM_025141 ;   NM_032342 ;   NM_032776 ;   NM_078474 ;   NM_152403 ;   NM_170742 ;   NM_182798 ;   NM_198859 ;   NR_002710 ;   NR_027928 ;   NR_028408 ;   NR_038325 ;   NR_038326 ;   NR_103809 ;   NR_120371 ;   NR_120453 ;   NR_120673 ;   NR_121624 ;   NR_134512 ;  

Predicted by TAPIR

NM_001184746 ;   NM_001184747 ;   NM_001184748 ;   NM_001267045 ;   NM_001282782 ;   NM_001282785 ;   NM_001303107 ;   NM_001303108 ;   NM_001307960 ;   NM_001308026 ;   NM_001323906 ;   NM_001323907 ;   NM_001323908 ;   NM_001323909 ;   NM_001323910 ;   NM_001323911 ;   NM_001323912 ;   NM_001323913 ;   NM_001370528 ;   NM_001371233 ;   NM_002077 ;   NM_014502 ;   NM_018006 ;   NM_025108 ;   NM_025141 ;   NM_078474 ;   NM_144618 ;   NM_198859 ;   NR_028408 ;   NR_103809 ;   NR_120673 ;   NR_121624 ;