The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR396
  5. gmc-miR396d

Accession: B34422352

Entry

ID: gmc-miR396d
Alias: F137.K000035.A29*
Sequence: UUCCACGGCUUUCUUGAACC
Description: MIR396 putative
Species: 秦艽  Species latin name: Gentiana macrophylla
TCM Name: Qinjiao(秦艽)  
TCM Resource (Sample number): 秦艽(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

smo-miR396;

Bencao Homologs

Bjl-miR396d; cof-miR396d; cso-miR396d; csp-miR396d; epr-miR396e; esn-miR396d; gbi-miR396f; gmc-miR396d; ija-miR396d; por-miR396f;

Rfam Alignments

>> MIR396  microRNA MIR396
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.021   17.9   0.0  cm       11       30 ~~           1          20 + ~~ 1.00 5'&3' 0.50
                                 ??? ?????? ???? ??       NC
                         ~~~~~~--<<<-<<<<<<-<<<<-<<~~~~~~ CS
               MIR396  1 <[10]*UUCCACgGCUUUCUUGAACU*[88]> 118
                               UUCCACGGCUUUCUUGAAC
          por-miR396f  1 <[ 0]*UUCCACGGCUUUCUUGAACC*[ 0]> 20
                         ......********************...... PP

Targets

Predicted by TargetFinder

NM_000565 ;   NM_001002811 ;   NM_001025109 ;   NM_001281504 ;   NM_001286229 ;   NM_001286230 ;   NM_001289987 ;   NM_001300866 ;   NM_001350520 ;   NM_001372065 ;   NM_001372068 ;   NM_001372069 ;   NM_001372070 ;   NM_004860 ;   NM_014505 ;   NM_015114 ;   NM_015168 ;   NM_015261 ;   NM_015687 ;   NM_015964 ;   NM_016140 ;   NM_016448 ;   NM_022739 ;   NM_024546 ;   NM_024874 ;   NM_032885 ;   NM_181359 ;   NM_198976 ;   NM_199131 ;  

Predicted by TAPIR

NM_000565 ;   NM_001002811 ;   NM_001025109 ;   NM_001281504 ;   NM_001286230 ;   NM_001287491 ;   NM_001297755 ;   NM_001297756 ;   NM_001297757 ;   NM_001350520 ;   NM_001366022 ;   NM_001372065 ;   NM_001372068 ;   NM_001372069 ;   NM_001372070 ;   NM_004860 ;   NM_015168 ;   NM_015261 ;   NM_015964 ;   NM_016140 ;   NM_016448 ;   NM_022739 ;   NM_024874 ;   NM_030940 ;   NM_032885 ;   NM_133636 ;   NM_181359 ;   NM_198976 ;   NM_199131 ;   NM_207429 ;