The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. gmc-miR166h

Accession: B34439029

Entry

ID: gmc-miR166h
Alias: F184.L000007.A3D*
Sequence: GGAAUGUUGUCUGGCUCGAGG
Description: MIR166 putative
Species: 秦艽  Species latin name: Gentiana macrophylla
TCM Name: Qinjiao(秦艽)  
TCM Resource (Sample number): 秦艽(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR166a-5p; aly-miR166c-5p; aly-miR166d-5p; bdi-miR166e-5p; cas-miR166a; csi-miR166a-5p; csi-miR166e-5p; eun-miR166-5p; gma-miR166a-5p; gma-miR166c-5p; gma-miR166l; mtr-miR166g-5p; osa-miR166d-5p; stu-miR166a-5p; vca-miR166b-5p; zma-miR166c-5p;

Bencao Homologs

Bjl-miR166e; Bsr-miR166g; aha-miR166h; aox-miR166f; apl-miR166h; ave-miR166g; bca-miR166e; cco-miR166aj; ccs-miR166aj; cmd-miR166f; cmj-miR166f; cof-miR166aj; cso-miR166e; csp-miR166g; csu-miR166g; dst-miR166k; ehu-miR166g; fmu-miR166f; gbi-miR166ak; gja-miR166e; gma-miR166i; gmc-miR166h; gpe-miR166g; gsi-miR166f; hcr-miR166ao; hof-miR166h; ili-miR166i; lfo-miR166g; llc-miR166j; llu-miR166f; mda-miR166c; nja-miR166f; nnu-miR166ag; nsc-miR166f; pav-miR166g; pcl-miR166i; pcn-miR166f; pfr-miR166ao; poe-miR166f; por-miR166i; psu-miR166f; rch-miR166ag; rja-miR166f; sar-miR166f; sch-miR166k; sdi-miR166f; smi-miR166e; ssu-miR166e; sto-miR166g; tch-miR166d; tci-miR166g; tki-miR166a; twi-miR166e;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00044   21.1   0.0  cm        8       28 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                                                                ??????  ??????  ???         NC
                                                           ~~~~~<<<<<<--<<<<<<--<<<__~~~~~~ CS
                                                mir-166  1 <[7]*GGAAUGUUGUCUGGCUCGAGG*[98]> 126
                                                                GGAAUGUUGUCUGGCUCGAGG
                                            twi-miR166e  1 <[0]*GGAAUGUUGUCUGGCUCGAGG*[ 0]> 21
                                                           .....*********************...... PP

Targets

Predicted by TargetFinder

NM_001012750 ;   NM_001012751 ;   NM_001012752 ;   NM_001178116 ;   NM_001178119 ;   NM_001178120 ;   NM_001178121 ;   NM_001178122 ;   NM_001178123 ;   NM_001178124 ;   NM_001178125 ;   NM_001282853 ;   NM_001282854 ;   NM_001348029 ;   NM_001348030 ;   NM_001348031 ;   NM_001348032 ;   NM_001348033 ;   NM_001348034 ;   NM_005470 ;   NM_024652 ;   NM_145012 ;   NM_181698 ;   NR_145410 ;  

Predicted by TAPIR

NM_001282853 ;   NM_001282854 ;   NM_001304811 ;   NM_001318502 ;   NM_001346153 ;   NM_001346155 ;   NM_001346156 ;   NM_001346157 ;   NM_001352962 ;   NM_014709 ;   NM_019892 ;   NM_020374 ;   NM_024652 ;   NM_080836 ;   NM_145012 ;   NM_181698 ;   NR_144379 ;   NR_144380 ;   NR_144382 ;