The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. bpi-miR1f

Accession: B12137585

Entry

ID: bpi-miR1f
Alias: F574.M000087.A11
Sequence: UGGAAUGUAAAGAAGUGUGUAU
Description: mir-1 microRNA precursor family predicted,partially
Species: 鬼针草  Species latin name: Bidens pilosa
TCM Name:
TCM Resource (Sample number): 鬼针草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR1g; bpi-miR1f; cci-miR1f; cfe-miR1g; cit-miR1an; cmd-miR1am; cof-miR1g; hcr-miR1aj; ljp-miR1f; poe-miR1am; pvl-miR1g; sor-miR1an; tch-miR1ai; zof-miR1h;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0056   20.2   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.32
                               ??? ??????????????????      NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                               UGGAAUGUAAAGAAGU UGUA
            zof-miR1h  1 <[ 0]*UGGAAUGUAAAGAAGUGUGUAU*[0]> 22
                         ......**********************..... PP

Targets

Predicted by TargetFinder

NM_005562 ;   NM_019004 ;   NR_103535 ;  

Predicted by TAPIR

NM_001370529 ;   NM_002037 ;   NM_005562 ;   NM_019004 ;   NM_153048 ;