The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. bpi-miR1d

Accession: B12137583

Entry

ID: bpi-miR1d
Alias: F574.M000079.A11
Sequence: UGGAAUGUAAAGAAGUAUGCAU
Description: mir-1 microRNA precursor family predicted,partially
Species: 鬼针草  Species latin name: Bidens pilosa
TCM Name:
TCM Resource (Sample number): 鬼针草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

asc-miR1c; bpi-miR1d; cfe-miR1d; cit-miR1ah; cmd-miR1ah; cof-miR1d; csp-miR1e; hcr-miR1ae; llu-miR1e; poe-miR1ah; pvl-miR1d; sor-miR1ah; tki-miR1e; zof-miR1e;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0085   19.5   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.32
                              ??? ??????????????????      NC
                        ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
               mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                              UGGAAUGUAAAGAAGUAUG A
           zof-miR1e  1 <[ 0]*UGGAAUGUAAAGAAGUAUGCAU*[0]> 22
                        ......**********************..... PP

Targets

Predicted by TargetFinder

NM_000892 ;   NM_001191060 ;   NM_001191061 ;   NM_001318394 ;   NM_001318396 ;   NM_005562 ;   NM_017631 ;   NM_024698 ;  

Predicted by TAPIR

NM_000892 ;   NM_001166018 ;   NM_001191060 ;   NM_001191061 ;   NM_001318394 ;   NM_001318396 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NM_017631 ;   NM_024698 ;