The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. bpi-miR133bc

Accession: B12223423

Entry

ID: bpi-miR133bc
Alias: F12642.O000159.A11
Sequence: UUUGGUCCCCUUCAACCAGCUGUU
Description: mir-133 microRNA precursor family predicted,partially
Species: 鬼针草  Species latin name: Bidens pilosa
TCM Name:
TCM Resource (Sample number): 鬼针草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

acr-miR133g; asc-miR133s; bpi-miR133bc; cci-miR133q; cfe-miR133v; cit-miR133ds; cmd-miR133br; eja-miR133d; hcr-miR133bn; ljp-miR133n; poe-miR133bt; pvl-miR133m; sar-miR133o; sch-miR133q; sdf-miR133j; sor-miR133dx; tch-miR133bi; zof-miR133t;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   2.5e-05   25.5   0.0  cm       51       73 ~.           1          23 + ~. 1.00    5' 0.52
                               ??????     ?? ???????   NC
                         ~~~~~~>>>>>>----->>->>>>>>>-- CS
              mir-133 14 <[37]*UuUGGUCCCCUUCAACCAGCuGU 73
                               UUUGGUCCCCUUCAACCAGCUGU
          zof-miR133t  1 <[ 0]*UUUGGUCCCCUUCAACCAGCUGU 23
                         ......*********************** PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001364885 ;   NM_004853 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;  

Predicted by TAPIR

NM_001145153 ;   NM_001364885 ;   NM_022744 ;   NM_024791 ;   NM_025081 ;   NM_144649 ;