The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR8
  5. bhi-miR8c

Accession: B11269875

Entry

ID: bhi-miR8c
Alias: F27978.M000005.A25
Sequence: UAAUACUGUCAGGUAAAGAUGU
Description: mir-8/mir-141/mir-200 microRNA precursor family like,predicted,partially
Species: 冬瓜  Species latin name: Benincasa hispida
TCM Name: Dongguapi(冬瓜皮)  
TCM Resource (Sample number): 冬瓜皮(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bsr-miR8b; Bswzz-miR8d; acr-miR8f; bca-miR8m; bhi-miR8c; cba-miR8b; cci-miR8; ccs-miR8c; cfe-miR8i; cof-miR8e; cph-miR8d; ehu-miR8b; fmu-miR8i; ljc-miR8e; lji-miR8d; llu-miR8g; nnu-miR8b; ofi-miR8; pch-miR8; poe-miR8o; rch-miR8d; run-miR8c; sad-miR8b; sar-miR8b; sch-miR8d; tch-miR8d; tfa-miR8f; tmo-miR8e; zof-miR8k;

Rfam Alignments

>> mir-8  mir-8/mir-141/mir-200 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0066   18.5   0.0  cm       48       68 ~.           1          21 + ~. 1.00    5' 0.33
                                                                 ?????????   ???? ???? NC
                                                           ~~~~~~>>>>>>>>>--->>>>->>>> CS
                                                  mir-8 10 <[38]*uAAcACUGcCUGGUAAuGAUG 68
                                                                 UAA ACUG C GGUAA+GAUG
                                              zof-miR8k  1 <[ 0]*UAAUACUGUCAGGUAAAGAUG 21
                                                           ......9******************** PP

Targets

Predicted by TargetFinder

NM_001134830 ;   NM_001134831 ;   NM_001134832 ;   NM_001301085 ;   NM_001328664 ;   NM_001328665 ;   NM_001328666 ;   NM_001328667 ;   NM_001350503 ;   NM_001350504 ;   NM_004815 ;   NM_005215 ;   NM_006775 ;   NM_017651 ;   NM_031435 ;   NM_206853 ;   NM_206854 ;   NM_206855 ;   NR_110270 ;  

Predicted by TAPIR

NM_001328664 ;   NM_001328665 ;   NM_001328666 ;   NM_001328667 ;   NM_004815 ;   NM_005215 ;   NM_018376 ;   NM_031435 ;