The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR7
  5. bhi-miR7c

Accession: B11346809

Entry

ID: bhi-miR7c
Alias: F98069.L000045.A25
Sequence: UGGAAGACUAGUGAUUUUGUU
Description: mir-7 microRNA precursor predicted,partially
Species: 冬瓜  Species latin name: Benincasa hispida
TCM Name: Dongguapi(冬瓜皮)  
TCM Resource (Sample number): 冬瓜皮(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR7h; bca-miR7c; bhi-miR7c; cba-miR7b; cfe-miR7d; cmd-miR7f; cso-miR7b; csp-miR7b; csu-miR7c; fmu-miR7c; gel-miR7c; hcr-miR7b; ljc-miR7c; lji-miR7b; llu-miR7c; pfr-miR7c; poe-miR7d; ppr-miR7d; sba-miR7b; sgi-miR7c; sor-miR7d; sse-miR7; tfa-miR7b; tki-miR7g; zof-miR7c;

Rfam Alignments

>> mir-7  mir-7 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0031   20.7   0.0  cm       15       35 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                                                               ??       ????? ?????       NC
                                                        ~~~~~~-<<-------<<<<<-<<<<<~~~~~~ CS
                                               mir-7  1 <[14]*UGGAAGACUAGuGAuUUUgUU*[53]> 88
                                                              UGGAAGACUAGUGAUUUUGUU
                                           zof-miR7c  1 <[ 0]*UGGAAGACUAGUGAUUUUGUU*[ 0]> 21
                                                        ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001005214 ;   NM_001005353 ;   NM_001048166 ;   NM_001171932 ;   NM_001244766 ;   NM_001256316 ;   NM_001282936 ;   NM_001282937 ;   NM_001282938 ;   NM_001282939 ;   NM_001330616 ;   NM_001354830 ;   NM_001354831 ;   NM_001354832 ;   NM_001354833 ;   NM_002901 ;   NM_003035 ;   NM_013249 ;   NM_013410 ;   NM_031422 ;   NM_032315 ;   NM_173468 ;   NM_203464 ;   NR_039867 ;  

Predicted by TAPIR

NM_001005214 ;   NM_001005353 ;   NM_001048166 ;   NM_001166058 ;   NM_001178084 ;   NM_001207048 ;   NM_001207049 ;   NM_001244766 ;   NM_001256316 ;   NM_001282936 ;   NM_001282937 ;   NM_001282938 ;   NM_001282939 ;   NM_001330616 ;   NM_001354509 ;   NM_001354830 ;   NM_001354831 ;   NM_001354832 ;   NM_001354833 ;   NM_003035 ;   NM_012104 ;   NM_013249 ;   NM_013410 ;   NM_031422 ;   NM_130806 ;   NM_138971 ;   NM_138972 ;   NM_138973 ;   NM_173468 ;   NM_203464 ;   NR_039867 ;