The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR8
  5. bch-miR8b

Accession: B10310823

Entry

ID: bch-miR8b
Alias: F4014.N000003.A25
Sequence: UAAUACUGCCUGGUAAUGAUGAC
Description: mir-8/mir-141/mir-200 microRNA precursor family predicted,partially
Species: 北柴胡  Species latin name: Bupleurum Chinense
TCM Name:
TCM Resource (Sample number): 北柴胡(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR8b; aar-miR8; bca-miR8b; bch-miR8b; cas-miR8a; cfe-miR8b; cit-miR8b; cmd-miR8b; csp-miR8a; fmu-miR8b; gel-miR8b; hcr-miR8b; poe-miR8b; ppr-miR8b; sch-miR8a; sdi-miR8b; sgi-miR8b; sor-miR8b; tch-miR8a; tki-miR8b; vph-miR8b; zof-miR8a;

Rfam Alignments

>> mir-8  mir-8/mir-141/mir-200 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0014   20.9   0.0  cm       48       69 ~.           1          22 + ~. 1.00    5' 0.36
                                                               ?????????   ???? ????? NC
                                                         ~~~~~~>>>>>>>>>--->>>>->>>>> CS
                                                mir-8  9 <[39]*uAAcACUGcCUGGUAAuGAUGg 69
                                                               UAA ACUGCCUGGUAAUGAUG
                                            zof-miR8a  1 <[ 0]*UAAUACUGCCUGGUAAUGAUGA 22
                                                         ......9********************* PP

Targets

Predicted by TargetFinder


Predicted by TAPIR

NM_001042494 ;   NM_001042495 ;   NM_001042496 ;   NM_001042497 ;   NM_001267722 ;   NM_001365088 ;   NM_001365088 ;   NM_005135 ;   NM_006947 ;   NM_133647 ;   NR_151856 ;