The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR168
  5. bch-miR168c

Accession: B10363185

Entry

ID: bch-miR168c
Alias: F9599.K000070.A3D*
Sequence: UCGCUUGGUGCAGGUCGGGA
Description: MIR168 putative
Species: 北柴胡  Species latin name: Bupleurum Chinense
TCM Name:
TCM Resource (Sample number): 北柴胡(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

cme-miR168;

Bencao Homologs

Bjl-miR168b; aan-miR168c; aha-miR168d; aox-miR168; apa-miR168c; apl-miR168b; ave-miR168f; bca-miR168e; bch-miR168c; bmj-miR168b; bpi-miR168d; cas-miR168b; cco-miR168d; ccs-miR168e; cit-miR168c; clo-miR168; cmi-miR168e; cmj-miR168; cmo-miR168c; cof-miR168b; cor-miR168; cso-miR168; csp-miR168b; csu-miR168b; dst-miR168b; efo-miR168; ehu-miR168b; epr-miR168f; est-miR168c; fsu-miR168g; gma-miR168b; gmc-miR168d; gpe-miR168f; gsi-miR168b; hcr-miR168f; ili-miR168c; kga-miR168; lcr-miR168e; lfo-miR168e; lji-miR168; ljp-miR168; llc-miR168; lpu-miR168b; mal-miR168; mca-miR168b; mch-miR168b; nca-miR168; nja-miR168; nnu-miR168f; nte-miR168b; pav-miR168; pcn-miR168; pfr-miR168c; por-miR168c; pvl-miR168g; rch-miR168; rcr-miR168h; rja-miR168d; sar-miR168; sba-miR168e; sbc-miR168i; sdf-miR168; smi-miR168f; sor-miR168b; ssu-miR168; sto-miR168c; tci-miR168; tmo-miR168d; vph-miR168; vum-miR168b; zof-miR168;

Rfam Alignments

>> MIR168  microRNA MIR168
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0011   19.2   0.0  cm       19       38 ~~           1          20 + ~~ 1.00 5'&3' 0.65
                                                              ??  ?????????? ?????       NC
                                                        ~~~~~~<<--<<<<<<<<<<-<<<<<~~~~~~ CS
                                              MIR168  1 <[18]*UCGCUUGGUGCAGGUCGGGA*[95]> 133
                                                              UCGCUUGGUGCAGGUCGGGA
                                          zof-miR168  1 <[ 0]*UCGCUUGGUGCAGGUCGGGA*[ 0]> 20
                                                        ......********************...... PP

Targets

Predicted by TargetFinder

NM_001040429 ;   NM_001116 ;   NM_001168407 ;   NM_001168408 ;   NM_001168409 ;   NM_001168410 ;   NM_001168411 ;   NM_001350414 ;   NM_001350415 ;   NM_001350416 ;   NM_001350417 ;   NM_001350418 ;   NM_001350419 ;   NM_001350420 ;   NM_001350421 ;   NM_001350422 ;   NM_001350423 ;   NM_001350424 ;   NM_001350425 ;   NM_001350426 ;   NM_001350427 ;   NM_001350428 ;   NM_001350429 ;   NM_001350430 ;   NM_001350431 ;   NM_001350432 ;   NM_001350433 ;   NM_001350434 ;   NM_001350435 ;   NM_001350436 ;   NM_001350437 ;   NM_001350438 ;   NM_001350439 ;   NM_001350440 ;   NM_001350441 ;   NM_001350442 ;   NM_001350443 ;   NM_001350444 ;   NM_001350445 ;   NM_001350446 ;   NM_001350447 ;   NM_001350448 ;   NM_001350449 ;   NM_001350450 ;   NM_001350454 ;   NM_001350455 ;   NM_001350456 ;   NM_001350457 ;   NM_001350458 ;   NM_001350459 ;   NM_001350460 ;   NM_001350461 ;   NM_001350462 ;   NM_001350463 ;   NM_001350464 ;   NM_001350465 ;   NM_001350466 ;   NM_001350467 ;   NM_001350468 ;   NM_001350469 ;   NM_001350470 ;   NM_001350471 ;   NM_001350472 ;   NM_001350473 ;   NM_001350474 ;   NM_001365684 ;   NM_014989 ;   NM_022455 ;   NM_145166 ;   NM_172349 ;  

Predicted by TAPIR

NM_001116 ;   NM_001261464 ;   NM_001261465 ;   NM_001346083 ;   NM_001374354 ;   NM_003815 ;   NM_005076 ;   NM_015001 ;   NM_145166 ;   NM_207191 ;   NM_207194 ;   NM_207195 ;   NM_207196 ;   NM_207197 ;   NR_048577 ;   NR_048578 ;   NR_048579 ;   NR_144350 ;