The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. apl-miR159au

Accession: B07781964

Entry

ID: apl-miR159au
Alias: F931.K001068.A11
Sequence: UUGGACUGAAGGGAGCUCCA
Description: microRNA MIR159 predicted
Species: 龙牙草  Species latin name: Agrimonia pilosa
TCM Name: Xianhecao(仙鹤草)  
TCM Resource (Sample number): 仙鹤草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

aha-miR159l; ala-miR159m; aof-miR159d; apl-miR159au; bmj-miR159l; cco-miR159ax; ccs-miR159ap; dst-miR159o; epr-miR159f; est-miR159l; gmc-miR159l; hof-miR159i; ini-miR159j; llc-miR159h; mca-miR159an; nnu-miR159aq; nte-miR159g; pav-miR159aq; pfr-miR159k; por-miR159as; rja-miR159at; sbc-miR159j; sgl-miR159m; smi-miR159am; ssu-miR159l; zof-miR159h;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0014   19.4   0.0  cm      165      183 ~.           1          19 + ~. 1.00    5' 0.58
                                 ???????  ????????  NC
                         ~~~~~~~->>>>>>>-->>>>>>>>: CS
              MIR159  13 <[152]*UUGGAcuGAAGGGAGCUCC 183
                                UUGGACUGAAGGGAGCUCC
         zof-miR159h   1 <[  0]*UUGGACUGAAGGGAGCUCC 19
                         .......******************* PP

Targets

Predicted by TargetFinder

NM_001010915 ;   NM_001047160 ;   NM_001123364 ;   NM_001256850 ;   NM_001267550 ;   NM_001300860 ;   NM_001307985 ;   NM_001321883 ;   NM_001321903 ;   NM_001354594 ;   NM_001354595 ;   NM_003319 ;   NM_003853 ;   NM_005445 ;   NM_005863 ;   NM_014829 ;   NM_014906 ;   NM_015603 ;   NM_018484 ;   NM_032862 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NR_003682 ;   NR_048561 ;   NR_073040 ;   NR_073404 ;   NR_125341 ;   NR_157803 ;   NR_157804 ;  

Predicted by TAPIR

NM_000524 ;   NM_001001852 ;   NM_001010915 ;   NM_001166269 ;   NM_001166270 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_003853 ;   NM_014829 ;   NM_015603 ;   NM_017815 ;   NM_031287 ;   NM_032862 ;   NM_033208 ;   NR_003682 ;   NR_073404 ;   NR_125341 ;   NR_157803 ;   NR_157804 ;