The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. apa-miR319b

Accession: B07244375

Entry

ID: apa-miR319b
Alias: F47.K000007.A3D
Sequence: UUGGACUGAAGGGAGCUCCC
Description: MIR319 putative
Species: 穿心莲  Species latin name: Andrographis paniculata
TCM Name: Chuanxinlian(穿心莲)  
TCM Resource (Sample number): 穿心莲(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

atr-miR319a; atr-miR319c; cme-miR319a; cme-miR319b; ctr-miR319; gma-miR319a; gma-miR319b; gma-miR319e; lus-miR319b; mtr-miR319a-3p; mtr-miR319b-3p; pab-miR319a; pab-miR319b; pab-miR319c; pab-miR319f; pab-miR319g; pab-miR319i; pab-miR319k; pab-miR319l; pab-miR319m; pab-miR319n; ppe-miR319a; ptc-miR319a; ptc-miR319b; ptc-miR319c; ptc-miR319d;

Bencao Homologs

Bsr-miR319; aan-miR319c; acr-miR319b; acs-miR319; aeu-miR319b; aha-miR319c; ala-miR319c; aof-miR319d; aox-miR319; apa-miR319b; apl-miR319d; asc-miR319; ave-miR319b; bca-miR319c; bch-miR319c; bmj-miR319d; bpi-miR319b; car-miR319; ccm-miR319; cco-miR319e; ccs-miR319d; cid-miR319; clo-miR319b; cmi-miR319; cmo-miR319c; cof-miR319c; cpi-miR319b; csm-miR319c; cso-miR319a; csp-miR319a; dst-miR319c; ehu-miR319c; est-miR319d; fsu-miR319b; gbi-miR319b; gja-miR319b; gma-miR319d; gmc-miR319c; gpe-miR319c; gsi-miR319a; hcr-miR319c; hoc-miR319; hof-miR319c; ija-miR319c; ili-miR319c; ini-miR319b; kga-miR319b; lcr-miR319a; lfo-miR319a; ljn-miR319c; llc-miR319b; lln-miR319b; lpu-miR319b; mca-miR319d; mch-miR319b; nja-miR319b; nnu-miR319e; nsc-miR319b; nte-miR319b; pas-miR319c; pav-miR319d; pcl-miR319b; pcn-miR319b; pfr-miR319c; pla-miR319; pmu-miR319; por-miR319d; psu-miR319c; pvl-miR319c; rch-miR319c; rcr-miR319d; rja-miR319d; run-miR319; sad-miR319b; sba-miR319c; sbc-miR319d; sch-miR319c; sdi-miR319b; sgl-miR319d; smi-miR319c; smn-miR319b; sse-miR319b; ssu-miR319d; sto-miR319c; tci-miR319b; tmo-miR319b; twi-miR319c; vof-miR319c; vph-miR319; zof-miR319d;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   19.5   0.0  cm      165      184 ~~           1          20 + ~~ 1.00 5'&3' 0.60
                                                               ???????  ????????         NC
                                                       ~~~~~~~->>>>>>>-->>>>>>>>::~~~~~~ CS
                                            MIR159   1 <[164]*UUGGAcuGAAGGGAGCUCCu*[12]> 196
                                                              UUGGACUGAAGGGAGCUCC+
                                       zof-miR319d   1 <[  0]*UUGGACUGAAGGGAGCUCCC*[ 0]> 20
                                                       .......********************...... PP

Targets

Predicted by TargetFinder

NM_001010915 ;   NM_001171740 ;   NM_001171741 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_003076 ;   NM_005445 ;   NM_014829 ;   NM_014906 ;   NM_015603 ;   NM_016210 ;   NM_022781 ;   NM_022895 ;   NM_033208 ;   NM_139071 ;   NM_194328 ;   NM_194329 ;   NM_194330 ;   NM_194332 ;   NR_003682 ;   NR_029401 ;   NR_033908 ;   NR_048561 ;   NR_104409 ;   NR_125341 ;   NR_132119 ;   NR_135112 ;  

Predicted by TAPIR

NM_001010915 ;   NM_001171740 ;   NM_001171741 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_001371328 ;   NM_003076 ;   NM_014829 ;   NM_015603 ;   NM_016210 ;   NM_022895 ;   NM_139071 ;   NR_003682 ;   NR_029401 ;   NR_033908 ;   NR_104409 ;   NR_125341 ;   NR_132119 ;   NR_135112 ;