The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. aha-miR166j

Accession: B04837724

Entry

ID: aha-miR166j
Alias: F316.L000014.A25
Sequence: UCGGACCAGGCUUCAUUCCCA
Description: mir-166 microRNA precursor predicted,partially
Species: 海南山姜  Species latin name: Alpinia hainanensis
TCM Name: Caodoukou(草豆蔻)  
TCM Resource (Sample number): 草豆蔻(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR166g; Bsr-miR166j; Bswzz-miR166c; acn-miR166d; aha-miR166j; ala-miR166l; apl-miR166k; ath-miR166e; ave-miR166i; bhi-miR166f; car-miR166n; cas-miR166h; cci-miR166e; cco-miR166an; ccs-miR166al; cde-miR166f; cid-miR166j; cit-miR166j; cja-miR166i; cmd-miR166h; cof-miR166am; csp-miR166i; dst-miR166m; eja-miR166h; epr-miR166ap; est-miR166l; fsu-miR166k; gbi-miR166an; gja-miR166h; gma-miR166k; gmc-miR166k; gsi-miR166h; hcr-miR166as; hmu-miR166i; hof-miR166j; iba-miR166i; ini-miR166h; lfo-miR166i; ljc-miR166j; lji-miR166h; ljp-miR166h; llc-miR166l; lpu-miR166ak; mal-miR166i; mca-miR166am; mch-miR166j; nnu-miR166aj; nte-miR166i; pav-miR166i; pcl-miR166k; pcn-miR166h; pfr-miR166ar; pmu-miR166d; poe-miR166h; por-miR166k; ptn-miR166g; pvl-miR166aq; rch-miR166aj; rte-miR166h; sad-miR166g; sbc-miR166k; sch-miR166m; sdf-miR166i; sdi-miR166h; sgl-miR166e; smi-miR166g; sor-miR166j; ssa-miR166h; sse-miR166e; ssu-miR166g; sto-miR166i; tci-miR166j; twi-miR166f; vof-miR166k; vum-miR166g;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00014   22.7   0.0  cm      101      120 ~.           1          20 + ~. 1.00    5' 0.60
                                                                ???  ??????  ??????? NC
                                                          ~~~~~~>>>-->>>>>>-->>>>>>> CS
                                              mir-166   7 <[94]*UCGGACCAGGCUUCAUUCCc 120
                                                                UCGGACCAGGCUUCAUUCCC
                                          vum-miR166g   1 <[ 0]*UCGGACCAGGCUUCAUUCCC 20
                                                          ......******************** PP

Targets

Predicted by TargetFinder

NM_015221 ;   NM_153350 ;  

Predicted by TAPIR

NM_002207 ;   NM_015221 ;   NM_017814 ;   NM_153350 ;