The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. acs-miR1

Accession: B02170319

Entry

ID: acs-miR1
Alias: F5708.M000162.A25
Sequence: UGGAAUGUAAAGAAGUAUGUAG
Description: mir-1 microRNA precursor family predicted,partially
Species: 云木香  Species latin name: Aucklandia costus
TCM Name: Muxiang(木香)  
TCM Resource (Sample number): 木香(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bsr-miR1d; Bswzz-miR1n; aar-miR1e; abs-miR1f; acr-miR1n; acs-miR1; act-miR1e; aeu-miR1f; agr-miR1d; asc-miR1o; bca-miR1p; car-miR1e; cba-miR1i; cci-miR1o; cfe-miR1r; cga-miR1c; che-miR1c; cit-miR1bm; cmd-miR1ba; cmj-miR1c; cof-miR1m; cor-miR1d; csp-miR1l; csu-miR1n; cya-miR1d; eja-miR1e; epr-miR1g; esn-miR1h; est-miR1d; fmu-miR1o; gel-miR1l; hcr-miR1ax; hof-miR1e; lch-miR1f; lcr-miR1e; ljc-miR1f; lji-miR1j; ljp-miR1l; lln-miR1e; llu-miR1o; mal-miR1e; nin-miR1; nja-miR1g; nnu-miR1j; nsc-miR1g; nte-miR1f; pav-miR1c; pch-miR1d; pfr-miR1g; pgi-miR1e; poe-miR1bf; ppo-miR1d; psu-miR1i; rcd-miR1c; rte-miR1d; run-miR1e; sar-miR1o; sdf-miR1k; sgi-miR1g; sln-miR1h; sor-miR1bi; spo-miR1j; sse-miR1e; tan-miR1b; tch-miR1aw; tfa-miR1k; tki-miR1l; vtr-miR1b; zof-miR1v;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0033   21.0   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.32
                                                             ??? ??????????????????      NC
                                                       ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                                              mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                                                             UGGAAUGUAAAGAAGUAUGUAG
                                          zof-miR1v  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUAG*[0]> 22
                                                       ......**********************..... PP

Targets

Predicted by TargetFinder

NM_000655 ;   NM_000892 ;   NM_001145373 ;   NM_001318394 ;   NM_001318396 ;   NM_005562 ;   NR_029467 ;  

Predicted by TAPIR

NM_000892 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001166018 ;   NM_001318394 ;   NM_001318396 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NM_015028 ;