The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. aof-miR319b

Accession: B06577226

Entry

ID: aof-miR319b
Alias: F30.L000019.A29
Sequence: UUGGACUGAAGGGAGCUCCCA
Description: MIR319 putative
Species: 高良姜  Species latin name: Alpinia officinarum
TCM Name: Gaoliangjiang(高良姜)  
TCM Resource (Sample number): 高良姜(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

mtr-miR319c-3p; vvi-miR319g;

Bencao Homologs

aof-miR319b; apl-miR319b; bmj-miR319b; cco-miR319b; ccs-miR319b; est-miR319b; mca-miR319b; nnu-miR319b; pav-miR319b; por-miR319b; rcr-miR319b; rja-miR319b; sbc-miR319b; sch-miR319b; sgl-miR319b; ssu-miR319b; zof-miR319b;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0014   19.5   0.0  cm      165      184 ~.           1          20 + ~. 1.00    5' 0.60
                                 ???????  ????????   NC
                         ~~~~~~~->>>>>>>-->>>>>>>>:: CS
              MIR159  13 <[152]*UUGGAcuGAAGGGAGCUCCu 184
                                UUGGACUGAAGGGAGCUCC+
         zof-miR319b   1 <[  0]*UUGGACUGAAGGGAGCUCCC 20
                         .......******************** PP

Targets

Predicted by TargetFinder

NM_001010915 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_005445 ;   NM_014829 ;   NM_022895 ;   NR_104409 ;   NR_125341 ;  

Predicted by TAPIR

NM_001001852 ;   NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_001371328 ;   NM_022895 ;   NM_033208 ;   NR_104409 ;