The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. csp-miR30u

Accession: B25468033

Entry

ID: csp-miR30u
Alias: F15920.O000055.A25
Sequence: UGUAAACAUCCUUGACUGGAAGCU
Description: mir-30 microRNA precursor predicted,partially
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30br; acr-miR30t; asc-miR30bh; bca-miR30ba; bch-miR30az; bhi-miR30ax; bpi-miR30l; cas-miR30g; cba-miR30n; cci-miR30be; cfe-miR30bl; cit-miR30fx; cmd-miR30ch; cmi-miR30e; cri-miR30d; cso-miR30g; csp-miR30u; csu-miR30q; epr-miR30p; esn-miR30p; fmu-miR30az; fsu-miR30j; gpe-miR30b; hcr-miR30by; lba-miR30i; lgr-miR30h; ljn-miR30g; ljo-miR30g; ljp-miR30ba; llu-miR30m; mpu-miR30f; nnu-miR30l; pfr-miR30p; poe-miR30db; ppr-miR30ba; psu-miR30g; pvl-miR30o; sar-miR30p; sca-miR30c; sdf-miR30x; sdi-miR30e; sgi-miR30at; smi-miR30; sor-miR30fs; tfa-miR30m; tki-miR30bg; tmo-miR30b; vph-miR30aw; zof-miR30bj;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   2.6e-05   29.3   0.0  cm        1       24 [~           1          24 + [~ 1.00    3' 0.42
                                                            ??????????  ???????????       NC
                                                           :<<<<<<<<<<--<<<<<<<<<<<~~~~~~ CS
                                                 mir-30  1 UGuAAACAUCcUcGACuGgaAGCu*[36]> 60
                                                           UGUAAACAUCCU+GACUGGAAGCU
                                            zof-miR30bj  1 UGUAAACAUCCUUGACUGGAAGCU*[ 0]> 24
                                                           ************************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR

NR_029846 ;   NR_029846 ;