The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR396
  5. csp-miR396e

Accession: B25074686

Entry

ID: csp-miR396e
Alias: F137.L000062.A29*
Sequence: UUCCACGGCUUUCUUGAACUU
Description: MIR396 putative
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

pab-miR396b; pab-miR396c; pab-miR396i; pab-miR396j; pab-miR396k; pab-miR396l; pab-miR396m; pab-miR396n; pab-miR396o; pab-miR396p; pab-miR396q; pab-miR396r; pab-miR396s; pab-miR396t; ptc-miR396g-5p; tcc-miR396d;

Bencao Homologs

Bjl-miR396e; bca-miR396d; cso-miR396e; csp-miR396e; epr-miR396f; esn-miR396e; est-miR396d; gbi-miR396g; lfo-miR396e; nnu-miR396g; pfr-miR396d; por-miR396g;

Rfam Alignments

>> MIR396  microRNA MIR396
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0059   19.9   0.0  cm       11       31 ~~           1          21 + ~~ 1.00 5'&3' 0.43
                                ??? ?????? ???? ???       NC
                        ~~~~~~--<<<-<<<<<<-<<<<-<<<~~~~~~ CS
              MIR396  1 <[10]*UUCCACgGCUUUCUUGAACUg*[87]> 118
                              UUCCACGGCUUUCUUGAACU
         por-miR396g  1 <[ 0]*UUCCACGGCUUUCUUGAACUU*[ 0]> 21
                        ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001098721 ;   NM_001098722 ;   NM_001193360 ;   NM_001193361 ;   NM_001193362 ;   NM_001193363 ;   NM_001281504 ;   NM_004485 ;   NM_004860 ;   NM_015964 ;   NM_016140 ;   NM_018199 ;   NM_032862 ;   NM_032885 ;   NM_198976 ;   NR_034164 ;   NR_034165 ;   NR_040013 ;   NR_073430 ;  

Predicted by TAPIR

NM_001193360 ;   NM_001193361 ;   NM_001193362 ;   NM_001193363 ;   NM_004860 ;   NM_015114 ;   NM_015964 ;   NM_016140 ;   NM_018199 ;   NM_030940 ;   NM_032862 ;   NM_198976 ;   NR_034164 ;   NR_034165 ;   NR_040013 ;   NR_073430 ;