The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR23
  5. csp-miR23b

Accession: B25481299

Entry

ID: csp-miR23b
Alias: F19267.L000010.A11
Sequence: AUCACAUUGCCAGGGAUUUCU
Description: microRNA mir-23 predicted
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR23c; Bswzz-miR23c; asc-miR23c; bca-miR23c; cfe-miR23c; cit-miR23ac; cmd-miR23d; csp-miR23b; hcr-miR23d; poe-miR23ac; sor-miR23ae; zof-miR23c;

Rfam Alignments

>> mir-23  microRNA mir-23
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00027   22.2   0.0  cm       47       66 ~.           1          20 + ~. 1.00    5' 0.45
                              ???      ?????????   NC
                        ~~~~~~>>>------>>>>>>>>>:: CS
              mir-23 11 <[36]*AUCACAUUGCCAGGGAuUuC 66
                              AUCACAUUGCCAGGGAUUUC
          zof-miR23c  1 <[ 0]*AUCACAUUGCCAGGGAUUUC 20
                        ......******************** PP

Targets

Predicted by TargetFinder

NM_001145664 ;   NM_001184773 ;   NM_001184774 ;   NM_001184775 ;   NM_001184776 ;   NM_001257197 ;   NM_001257198 ;   NM_001348277 ;   NM_001367508 ;   NM_001367509 ;   NM_001367510 ;   NM_003441 ;   NM_003590 ;   NM_021115 ;  

Predicted by TAPIR

NM_001145664 ;   NM_001184773 ;   NM_001184774 ;   NM_001184775 ;   NM_001184776 ;   NM_001257197 ;   NM_001257198 ;   NM_001348277 ;   NM_001367508 ;   NM_001367509 ;   NM_001367510 ;   NM_003441 ;   NM_003590 ;   NM_015348 ;   NM_021115 ;   NR_104631 ;