The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. csp-miR122h

Accession: B25621579

Entry

ID: csp-miR122h
Alias: F118468.P000002.A11
Sequence: UGGAGUGUGACAAUGGUGUUUGAUU
Description: mir-122 microRNA precursor predicted,partially
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR122f; csp-miR122h;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0098   18.3   0.0  cm        9       33 ~~           1          25 + ~~ 0.99 5'&3' 0.40
                              ?  ??????? ???????????          NC
                         ~~~~~<--<<<<<<<-<<<<<<<<<<<___~~~~~~ CS
              mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUGUgU*[41]> 74
                              UGGAGUGUGACAAUGGUGUUUG  U
          csp-miR122h  1 <[0]*UGGAGUGUGACAAUGGUGUUUGAUU*[ 0]> 25
                         .....**********************999...... PP

Targets

Predicted by TargetFinder

NR_039899 ;  

Predicted by TAPIR

NR_039899 ;