The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. csp-miR122d

Accession: B25296592

Entry

ID: csp-miR122d
Alias: F1789.Q000022.A11
Sequence: UGGAGUGUGACAAUGGUGUUUGUAAU
Description: mir-122 microRNA precursor predicted,partially
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122f; csp-miR122d;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0075   18.7   0.0  cm        9       34 ~~           1          26 + ~~ 0.97 5'&3' 0.38
                              ?  ??????? ???????????           NC
                         ~~~~~<--<<<<<<<-<<<<<<<<<<<____~~~~~~ CS
              mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUGUgUC*[40]> 74
                              UGGAGUGUGACAAUGGUGUUUGU+
          csp-miR122d  1 <[0]*UGGAGUGUGACAAUGGUGUUUGUAAU*[ 0]> 26
                         .....**********************9977...... PP

Targets

Predicted by TargetFinder

NR_039899 ;  

Predicted by TAPIR

NR_039899 ;