The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR156
  5. csp-miR156b

Accession: B25223656

Entry

ID: csp-miR156b
Alias: F831.L000084.A3D
Sequence: UUGACAGAAGAGAGUGAGCAC
Description: MIR156 putative
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

fve-miR156a; fve-miR156b; fve-miR156c; fve-miR156e; gma-miR156k; gma-miR156n; gma-miR156o;

Bencao Homologs

Bjl-miR156c; aha-miR156b; aox-miR156a; apl-miR156c; cit-miR156c; cmd-miR156c; cof-miR156c; csp-miR156b; dst-miR156b; gpe-miR156c; pvl-miR156e; sch-miR156f; sto-miR156g;

Rfam Alignments

>> mir-156  mir-156 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0037   20.6   0.0  cm        1       21 [~           1          21 + [~ 1.00    3' 0.48
                                                        ?????????????????????       NC
                                                        <<<<<<<<<<<<<<<<<<<<<~~~~~~ CS
                                             mir-156  1 guGACaGaaGAGaGUGAGCAC*[67]> 88
                                                         UGACAGAAGAGAGUGAGCAC
                                         sto-miR156g  1 UUGACAGAAGAGAGUGAGCAC*[ 0]> 21
                                                        *********************...... PP

Targets

Predicted by TargetFinder

NM_000085 ;   NM_000477 ;   NM_001012414 ;   NM_001042704 ;   NM_001165945 ;   NM_001167580 ;   NM_001257139 ;   NM_001323031 ;   NM_001323032 ;   NM_001323033 ;   NM_001323034 ;   NM_001323036 ;   NM_001323037 ;   NM_001323038 ;   NM_001323039 ;   NM_001323040 ;   NM_004070 ;   NM_014848 ;   NM_020546 ;   NM_033121 ;   NR_002216 ;  

Predicted by TAPIR

NM_000477 ;   NM_001042704 ;   NM_001165945 ;   NM_001166242 ;   NM_001167580 ;   NM_001257139 ;   NM_001323031 ;   NM_001323032 ;   NM_001323033 ;   NM_001323034 ;   NM_001323036 ;   NM_001323037 ;   NM_001323038 ;   NM_001323039 ;   NM_001323040 ;   NM_004070 ;   NM_014848 ;   NM_020546 ;   NM_173793 ;   NR_002216 ;