The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR146
  5. csp-miR146

Accession: B25428387

Entry

ID: csp-miR146
Alias: F9241.N000042.A25
Sequence: UGAGAACUGAAUUCCAUAGGCUG
Description: microRNA mir-146 predicted
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR146i; Bswzz-miR146a; asc-miR146d; bca-miR146f; bch-miR146b; cfe-miR146j; cit-miR146i; cmd-miR146i; cof-miR146c; csp-miR146; csu-miR146; fmu-miR146b; hcr-miR146c; kga-miR146a; pfr-miR146c; poe-miR146h; ppr-miR146e; sdi-miR146; sgi-miR146c; sor-miR146h; tki-miR146d; vph-miR146a; zof-miR146c;

Rfam Alignments

>> mir-146  microRNA mir-146
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00026   23.9   0.0  cm       16       38 ~~           1          23 + ~~ 1.00 5'&3' 0.43
                                                                    ????????       ????         NC
                                                            ~~~~~~--<<<<<<<<-------<<<<__~~~~~~ CS
                                                 mir-146  1 <[15]*UGAGAACUGAAUUCCAUgGgcUG*[52]> 90
                                                                  UGAGAACUGAAUUCCAU GGCUG
                                             zof-miR146c  1 <[ 0]*UGAGAACUGAAUUCCAUAGGCUG*[ 0]> 23
                                                            ......***********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR

NM_004391 ;   NM_004391 ;