The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. cso-miR319b

Accession: B24822520

Entry

ID: cso-miR319b
Alias: F279.K000187.A3D
Sequence: AUUGGACUGAAGGGAGCUCC
Description: MIR319 putative
Species: 锁阳  Species latin name: Cynomorium songaricum
TCM Name: Suoyang(锁阳)  
TCM Resource (Sample number): 锁阳(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

cpa-miR319; mes-miR319f;

Bencao Homologs

apl-miR319i; cso-miR319b; hof-miR319h; pcn-miR319d; por-miR319g; smi-miR319g;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0011   19.8   0.0  cm      164      183 ~~           1          20 + ~~ 1.00 5'&3' 0.55
                                                                 ???????  ????????        NC
                                                        ~~~~~~~-->>>>>>>-->>>>>>>>:~~~~~~ CS
                                             MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCC*[13]> 196
                                                               +UUGGACUGAAGGGAGCUCC
                                        smi-miR319g   1 <[  0]*AUUGGACUGAAGGGAGCUCC*[ 0]> 20
                                                        .......********************...... PP

Targets

Predicted by TargetFinder

NM_001010915 ;   NM_001123364 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_001354594 ;   NM_001354595 ;   NM_001364689 ;   NM_001364690 ;   NM_003853 ;   NM_005445 ;   NM_014829 ;   NM_014906 ;   NM_020697 ;   NR_048561 ;   NR_105002 ;   NR_110763 ;   NR_125341 ;  

Predicted by TAPIR

NM_001010915 ;   NM_001300860 ;   NM_001321883 ;   NM_001321903 ;   NM_001364689 ;   NM_001364690 ;   NM_003853 ;   NM_014829 ;   NM_017520 ;   NR_105002 ;   NR_125341 ;