The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR396
  5. cso-miR396c

Accession: B24783659

Entry

ID: cso-miR396c
Alias: F137.K000034.A3D*
Sequence: UUCCACGGCUUUCUUGAACU
Description: MIR396 putative
Species: 锁阳  Species latin name: Cynomorium songaricum
TCM Name: Suoyang(锁阳)  
TCM Resource (Sample number): 锁阳(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

csi-miR396e-5p;

Bencao Homologs

Bjl-miR396c; aan-miR396e; aar-miR396b; abs-miR396b; agr-miR396; asi-miR396b; att-miR396b; bca-miR396c; bch-miR396b; car-miR396d; cid-miR396c; cja-miR396d; cmd-miR396c; cmi-miR396e; cmn-miR396b; cmo-miR396e; cof-miR396c; cso-miR396c; csp-miR396c; dst-miR396d; epr-miR396d; esc-miR396c; esn-miR396c; est-miR396c; fmu-miR396b; fvu-miR396; gbi-miR396e; gli-miR396b; gmc-miR396c; gpe-miR396e; hof-miR396b; ija-miR396c; ili-miR396e; lfo-miR396d; lln-miR396c; llu-miR396b; mca-miR396d; nnu-miR396f; nte-miR396c; pfr-miR396c; pgi-miR396b; por-miR396e; ppo-miR396; ppr-miR396c; sdi-miR396c; sgl-miR396c; smi-miR396d; sor-miR396b; sse-miR396b; tfa-miR396b;

Rfam Alignments

>> MIR396  microRNA MIR396
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0059   19.9   0.0  cm       11       30 ~~           1          20 + ~~ 1.00 5'&3' 0.45
                                                               ??? ?????? ???? ??       NC
                                                       ~~~~~~--<<<-<<<<<<-<<<<-<<~~~~~~ CS
                                             MIR396  1 <[10]*UUCCACgGCUUUCUUGAACU*[88]> 118
                                                             UUCCACGGCUUUCUUGAACU
                                        tfa-miR396b  1 <[ 0]*UUCCACGGCUUUCUUGAACU*[ 0]> 20
                                                       ......********************...... PP

Targets

Predicted by TargetFinder

NM_001184854 ;   NM_001184856 ;   NM_001193360 ;   NM_001193361 ;   NM_001193362 ;   NM_001193363 ;   NM_001258328 ;   NM_001270 ;   NM_001281504 ;   NM_001282335 ;   NM_001282874 ;   NM_001282875 ;   NM_001321232 ;   NM_001347701 ;   NM_001347702 ;   NM_001351937 ;   NM_001351938 ;   NM_001364113 ;   NM_001372065 ;   NM_001372068 ;   NM_001372069 ;   NM_001372070 ;   NM_003069 ;   NM_004370 ;   NM_004860 ;   NM_012292 ;   NM_013302 ;   NM_015261 ;   NM_015964 ;   NM_016140 ;   NM_017566 ;   NM_018199 ;   NM_022739 ;   NM_032862 ;   NM_032885 ;   NM_033071 ;   NM_182961 ;   NM_198976 ;   NR_034164 ;   NR_034165 ;   NR_040013 ;   NR_073430 ;   NR_147833 ;   NR_157078 ;   NR_157079 ;  

Predicted by TAPIR

NM_001193360 ;   NM_001193361 ;   NM_001193362 ;   NM_001193363 ;   NM_001258328 ;   NM_001281504 ;   NM_001282335 ;   NM_001282874 ;   NM_001282875 ;   NM_001286230 ;   NM_001297755 ;   NM_001297756 ;   NM_001297757 ;   NM_001321232 ;   NM_001347701 ;   NM_001347702 ;   NM_001372065 ;   NM_001372068 ;   NM_001372069 ;   NM_001372070 ;   NM_003069 ;   NM_004370 ;   NM_004860 ;   NM_012292 ;   NM_014505 ;   NM_015114 ;   NM_015261 ;   NM_015964 ;   NM_016140 ;   NM_016448 ;   NM_018199 ;   NM_022739 ;   NM_030940 ;   NM_032862 ;   NM_032885 ;   NM_033071 ;   NM_133636 ;   NM_182961 ;   NM_198976 ;   NM_207429 ;   NR_034164 ;   NR_034165 ;   NR_040013 ;   NR_040662 ;   NR_073430 ;