The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. csu-miR1p

Accession: B26209783

Entry

ID: csu-miR1p
Alias: F6947.M000008.A25
Sequence: UGGAAUGUAAGGAAGUGUGUGG
Description: mir-1 microRNA precursor family predicted,partially
Species: 毛叶榄  Species latin name: Canarium subulatum
TCM Name: Qingguo(青果)  
TCM Resource (Sample number): 青果(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1o; Bswzz-miR1o; acr-miR1o; act-miR1f; asc-miR1p; bca-miR1r; bci-miR1d; car-miR1g; cde-miR1h; cfe-miR1t; cit-miR1bo; cmd-miR1bc; cmj-miR1d; cri-miR1h; csp-miR1m; csu-miR1p; ehu-miR1f; esn-miR1i; fmu-miR1p; fsu-miR1i; gel-miR1n; gja-miR1e; hcr-miR1az; lgr-miR1m; ljp-miR1m; llu-miR1q; poe-miR1bg; ppr-miR1k; pvl-miR1o; sar-miR1q; sch-miR1q; sdf-miR1l; sgi-miR1i; sor-miR1bl; tch-miR1ay; tki-miR1n; zof-miR1w;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0084   19.5   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                            ??? ??????????????????      NC
                                                      ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                                             mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                                                            UGGAAUGUAA GAAGU UGU G
                                         zof-miR1w  1 <[ 0]*UGGAAUGUAAGGAAGUGUGUGG*[0]> 22
                                                      ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001197051 ;   NM_002240 ;   NM_007028 ;   NM_053023 ;   NR_134870 ;   NR_134871 ;  

Predicted by TAPIR