The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. cpe-miR159b

Accession: B22468220

Entry

ID: cpe-miR159b
Alias: F14.K000012.A25
Sequence: UUUGGAUUGAAGGGAGCUCG
Description: microRNA MIR159 predicted
Species: 杜虹花  Species latin name: Callicarpa pedunculata
TCM Name: Zizhuye(紫珠叶)  
TCM Resource (Sample number): 紫珠叶(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bsr-miR159c; aar-miR159b; abi-miR159c; acr-miR159c; act-miR159a; aha-miR159c; aju-miR159a; ala-miR159c; apl-miR159ac; ath-miR159b; ave-miR159c; bja-miR159c; bmj-miR159c; ccm-miR159a; cco-miR159ac; ccs-miR159ac; cmj-miR159a; cmo-miR159c; cpe-miR159b; cpi-miR159c; cso-miR159c; csu-miR159c; dst-miR159c; eja-miR159c; est-miR159c; gbi-miR159c; gli-miR159b; gma-miR159ac; gmc-miR159c; gpe-miR159c; gsi-miR159c; hmu-miR159c; hof-miR159b; ija-miR159c; ini-miR159c; lfo-miR159c; llc-miR159c; lpu-miR159ac; mca-miR159ac; nca-miR159c; nnu-miR159ac; nsc-miR159c; nte-miR159c; pav-miR159ac; pcl-miR159c; pcn-miR159c; pfr-miR159c; pmu-miR159c; poe-miR159c; por-miR159ac; psu-miR159ac; pvl-miR159ac; rch-miR159ac; rcr-miR159ac; rja-miR159ac; rte-miR159c; sgl-miR159c; smi-miR159ac; smn-miR159b; sto-miR159ac; twi-miR159c; vof-miR159c; vum-miR159c;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0025   18.4   0.0  cm      164      182 ~.           1          19 + ~. 1.00    5' 0.47
                                                                    ???????  ???????? NC
                                                           ~~~~~~~-->>>>>>>-->>>>>>>> CS
                                                MIR159  13 <[151]*uUUGGAcuGAAGGGAGCUC 182
                                                                  UUUGGA UGAAGGGAGCUC
                                           vum-miR159c   1 <[  0]*UUUGGAUUGAAGGGAGCUC 19
                                                           .......******************* PP

Targets

Predicted by TargetFinder

NM_001031684 ;   NM_001047160 ;   NM_001195272 ;   NM_001195446 ;   NM_001271634 ;   NM_001288824 ;   NM_001288825 ;   NM_001288826 ;   NM_001288827 ;   NM_001288828 ;   NM_001351444 ;   NM_001363802 ;   NM_001368133 ;   NM_005260 ;   NM_005444 ;   NM_005863 ;   NM_015021 ;   NM_031889 ;   NM_138694 ;   NM_170724 ;   NR_073040 ;   NR_073390 ;  

Predicted by TAPIR

NM_001024455 ;   NM_001031684 ;   NM_001047160 ;   NM_001195272 ;   NM_001195446 ;   NM_001271634 ;   NM_001363802 ;   NM_005444 ;   NM_005863 ;   NM_022894 ;   NM_138694 ;   NM_170724 ;   NR_073040 ;   NR_073390 ;