The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR9
  5. cit-miR9e

Accession: B16561309

Entry

ID: cit-miR9e
Alias: F4652.O000029.A11
Sequence: UCUUUGGUUAUCUAGCUGUAUGUU
Description: mir-9/mir-79 microRNA precursor family predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR9e; cit-miR9e; cmd-miR9d; ppr-miR9c; tki-miR9f;

Rfam Alignments

>> mir-9  mir-9/mir-79 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.006   20.2   0.0  cm        2       25 ~~           1          24 + ~~ 0.98 5'&3' 0.33
                                ???????????????  ????        NC
                         ~~~~~::<<<<<<<<<<<<<<<--<<<<_~~~~~~ CS
                mir-9  1 <[1]*UCUUuGGUuaucUAGCUGUAUGAG*[37]> 62
                              UCUUUGGUUAUCUAGCUGUAUG
            tki-miR9f  1 <[0]*UCUUUGGUUAUCUAGCUGUAUGUU*[ 0]> 24
                         .....**********************98...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR

NM_001025579 ;   NM_001330129 ;   NM_001330129 ;   NM_001363507 ;   NM_001363507 ;   NM_001363509 ;   NM_001363509 ;   NM_030808 ;