The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR9
  5. cit-miR9c

Accession: B16561306

Entry

ID: cit-miR9c
Alias: F4652.L000012.A25*
Sequence: UAAAGCUAGAUAACCGAAAGU
Description: mir-9/mir-79 microRNA precursor family predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR9c; cit-miR9c; lba-miR9c; ljo-miR9c; pvl-miR9c; tki-miR9c;

Rfam Alignments

>> mir-9  mir-9/mir-79 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0012   22.5   0.0  cm       42       62 ~]           1          21 + ~] 1.00    5' 0.33
                                                               ?  ???????????????    NC
                                                         ~~~~~~>-->>>>>>>>>>>>>>>::: CS
                                                mir-9  1 <[41]*UAAAGCUAgauaACCgAAggU 62
                                                               UAAAGCUAGAUAACCGAA+GU
                                            tki-miR9c  1 <[ 0]*UAAAGCUAGAUAACCGAAAGU 21
                                                         ......********************* PP

Targets

Predicted by TargetFinder

NM_001085377 ;   NM_001098500 ;   NM_001135599 ;   NM_001282767 ;   NM_001282768 ;   NM_001282769 ;   NM_001282770 ;   NM_001321681 ;   NM_002387 ;   NM_003238 ;   NM_019590 ;   NR_024383 ;   NR_024384 ;   NR_029691 ;   NR_030741 ;   NR_125715 ;   NR_138148 ;   NR_138149 ;   NR_152232 ;   NR_152233 ;   NR_152234 ;   NR_152236 ;   NR_152237 ;   NR_152240 ;   NR_152241 ;  

Predicted by TAPIR