The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR23
  5. cit-miR23bq

Accession: B16662411

Entry

ID: cit-miR23bq
Alias: F104498.N000143.A11*
Sequence: AUCACAUUGCCAGGGAUUUCCAU
Description: microRNA mir-23 predicted
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR23p; bch-miR23n; cit-miR23bq; cmd-miR23x; hcr-miR23w; poe-miR23ax; sor-miR23bp; tch-miR23g;

Rfam Alignments

>> mir-23  microRNA mir-23
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   2.4e-05   25.8   0.0  cm       47       68 ~.           1          22 + ~. 1.00    5' 0.45
                               ???      ?????????     NC
                         ~~~~~~>>>------>>>>>>>>>:::: CS
               mir-23 11 <[36]*AUCACAUUGCCAGGGAuUuCCA 68
                               AUCACAUUGCCAGGGAUUUCCA
           tch-miR23g  1 <[ 0]*AUCACAUUGCCAGGGAUUUCCA 22
                         ......********************** PP

Targets

Predicted by TargetFinder

NM_001257197 ;   NM_001257198 ;   NM_003590 ;  

Predicted by TAPIR

NM_001104586 ;   NM_001257197 ;   NM_001257198 ;   NM_001282910 ;   NM_001282911 ;   NM_001282912 ;   NM_001322427 ;   NM_001322428 ;   NM_001322429 ;   NM_001352676 ;   NM_001352677 ;   NM_001352678 ;   NM_001352679 ;   NM_003590 ;   NM_024744 ;   NR_136330 ;   NR_136331 ;   NR_148033 ;