The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR23
  5. cit-miR23bf

Accession: B16626429

Entry

ID: cit-miR23bf
Alias: F32880.K000036.A11*
Sequence: AUCACAUUGCCAGGGAUUUC
Description: microRNA mir-23 predicted
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR23l; bca-miR23l; bch-miR23i; cfe-miR23j; cit-miR23bf; cmd-miR23o; ehu-miR23b; fmu-miR23c; hcr-miR23o; poe-miR23aq; sor-miR23bd; zof-miR23i;

Rfam Alignments

>> mir-23  microRNA mir-23
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00026   22.2   0.0  cm       47       66 ~~           1          20 + ~~ 1.00 5'&3' 0.45
                   ???      ?????????        NC
             ~~~~~~>>>------>>>>>>>>>::~~~~~ CS
   mir-23  1 <[46]*AUCACAUUGCCAGGGAuUuC*[9]> 75
                   AUCACAUUGCCAGGGAUUUC
zof-miR23i  1 <[ 0]*AUCACAUUGCCAGGGAUUUC*[0]> 20
             ......********************..... PP

Targets

Predicted by TargetFinder

NM_001024611 ;   NM_001134382 ;   NM_001145664 ;   NM_001184773 ;   NM_001184774 ;   NM_001184775 ;   NM_001184776 ;   NM_001257197 ;   NM_001257198 ;   NM_001330619 ;   NM_001348277 ;   NM_001367508 ;   NM_001367509 ;   NM_001367510 ;   NM_003441 ;   NM_003590 ;   NM_005569 ;   NM_006734 ;   NM_014869 ;   NM_015035 ;   NM_016733 ;   NM_021115 ;   NR_046099 ;   NR_104631 ;  

Predicted by TAPIR

NM_001145664 ;   NM_001184773 ;   NM_001286164 ;   NM_001348277 ;   NM_001364856 ;   NM_003590 ;   NM_004319 ;   NM_005569 ;   NM_015348 ;   NM_016733 ;